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Bugfix/85 optional args are not always optional #105

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Merged
bergsalex merged 3 commits into from
Oct 22, 2025
Merged

Bugfix/85 optional args are not always optional #105

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9f6088d
Skip out_file writing if out_file is None
bergsalex Oct 21, 2025
a7c49a7
Skip out_file writing if out_file is None
bergsalex Oct 21, 2025
5872ccb
Fix typo 'aout_file' --> 'out_file'
bergsalex Oct 21, 2025
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17 changes: 9 additions & 8 deletions src/mouse_tracking/pytorch_inference/fecal_boli.py
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Original file line number Diff line number Diff line change
Expand Up @@ -163,12 +163,13 @@ def infer_fecal_boli_pytorch(args):
)
final_fecal_boli_detections = fecal_boli_results.get_results()
final_fecal_boli_counts = fecal_boli_counts.get_results()
write_fecal_boli_data(
args.out_file,
final_fecal_boli_detections,
final_fecal_boli_counts,
args.frame_interval,
model_definition["model-name"],
model_definition["model-checkpoint"],
)
if args.out_file is not None:
write_fecal_boli_data(
args.out_file,
final_fecal_boli_detections,
final_fecal_boli_counts,
args.frame_interval,
model_definition["model-name"],
model_definition["model-checkpoint"],
)
performance_accumulator.print_performance()
3 changes: 2 additions & 1 deletion src/mouse_tracking/tfs_inference/arena_corners.py
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Original file line number Diff line number Diff line change
Expand Up @@ -113,7 +113,8 @@ def infer_arena_corner_model(args):
model_definition["model-checkpoint"],
)
px_per_cm = get_px_per_cm(filtered_corners)
write_pixel_per_cm_attr(args.out_file, px_per_cm, "corner_detection")
if args.out_file is not None:
write_pixel_per_cm_attr(args.out_file, px_per_cm, "corner_detection")
if args.out_image is not None:
render = plot_keypoints(filtered_corners, frame)
imageio.imwrite(args.out_image, render)
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