deiPAGE

Introduction

This code is used to extract reversal pairs intra- and inter-samples.

main.ipynb contains the whole process.

pairmodule.py contains the core modules that implements the reversal extraction, reversal comparison. If you want to apply iPAGE, you can just take this part into your code.

num_cmRNA0.5.txt contains the circRNAs and mRNAs interaction in the ceRNA network.

num_lmRNA0.5.txt contains the lncRNAs and mRNAs interaction in the ceRNA network.

Dependency

numpy, scipy, matplotlib, statsmodels, fisher, sklearn, seaborn, pandas, mpl_toolkits, imblearn, mlxtend

Data

We provided our data in our paper. The other datasets can be inferred from the paper and downloaded from GEO.