[OC-840] handle gene mapper exceptions - #423
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An exception from the gene mapping code currently results in a duplicate of the prior variant being emitted, while skipping the current variant, including reusing the uid of the prior variant in the output sqlite. This commit changes the behavior to emit the prior variant just once and then emit the variant with the exception, but with zero gene mapping information, while preserving a log of the exception.
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An exception from the gene mapping code currently results in a duplicate of the prior variant being emitted, while skipping the current variant, including reusing the uid of the prior variant in the output sqlite.
This PR changes the behavior to emit the prior variant just once and then emit the variant with the exception, but with zero gene mapping information, while preserving a log of the exception.