Refactor adapters and simplify output handling with new helpers

.dockerignore

@@ -0,0 +1,7 @@
+target
+slurm
+docs
+.github
+.claude
+test_data
+Dockerfile

.github/workflows/rust.yml

@@ -16,6 +16,8 @@ jobs:
 
     steps:
     - uses: actions/checkout@v4
+    - name: Install dependencies
+      run: sudo apt-get update && sudo apt-get install -y python3-dev libnetcdf-dev libhdf5-dev libsqlite3-dev
     - name: Build
       run: cargo build --verbose
     - name: Run tests

Cargo.toml

@@ -28,6 +28,9 @@ toml = "0.8"
 dirs = "5"
 zarrs = { version = "0.23", features = ["filesystem"], optional = true }
 
+[dev-dependencies]
+tempfile = "3"
+
 [[bin]]
 name = "bmi-driver"
 path = "src/main.rs"

Dockerfile

@@ -0,0 +1,14 @@
+FROM awiciroh/ngiab AS ngiab_build
+WORKDIR /build
+RUN curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | bash -s -- -y
+RUN dnf install -y python3.11-devel netcdf-devel hdf5-devel sqlite-devel g++
+COPY . .
+RUN cargo build --release
+
+FROM awiciroh/ngiab AS final
+COPY --from=ngiab_build /build/target/release/bmi-driver /usr/local/bin/bmi-driver
+VOLUME /data
+RUN ln -s /ngen/ngen/data /data
+ENV OMP_NUM_THREADS=1
+ENTRYPOINT [ "/usr/local/bin/bmi-driver" ]
+CMD ["/data"]