Oop refactor - #10

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Jasplet wants to merge 183 commits into

Commits on Oct 6, 2025

updated find_min_ml_x_section. Now supports DAS and also used improved functions, multiprocessing etc
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6abaa31
removed unneeded import from obspy
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567623b
deleted imporrt
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fe6259e
updated licnece/copyright header
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c00b37c
added some input validation tests
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27b4dae
doctstring tweak plus fixed errror with kargs['gmpe'] when gmpe is not privded (now use get to return none)
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ef617f7
linting fixes
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6ff54c2
changed to test for a warning if method not provided as we default to ML
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943d14b
adding tests for create_grids
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94947c3
added imports
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efba2f7
re-ordered docstring
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c3f998f
updated version number in setup.py
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e852f7d
added tests for calc_min_ml_at_gridpoint
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94f4945
hatch changes
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6aed648
added helper function to get f0, n from a f1/f2 range
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dd3da22
added some basic erorr handling tests
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ed04eb9
removed f0 as an optinal variable as f0 should always be center frequency of f1, f2
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a1911dd
made same edites to psd_db_to_velocity
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d616321
added tests for psd_db_to_displacement_amplitude
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19e2217

Commits on Oct 7, 2025

Commits on Oct 9, 2025

Commits on Oct 10, 2025

updated citations
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642f085
added napleon to autoformat docstrings
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e9169a1
typo fix and added referencing
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90e38f9
added ref for CAL scale (Hutton + Boore 1987) Richter (1935)
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5c81482

Commits on Oct 14, 2025

added references in docstrigns such that sphinx will get them right
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e1ab540
added files for modeuls and sncast
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9014e15
refernecing fix
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f4b3eb2

Commits on Nov 19, 2025

Typo fixes in docstrings
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f1b4a9d
re-orders module docstring
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d055e4e
typo fix and re-ordered modules
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d782938
typo fix in module docstring
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4cb83aa
reformatted citations and fixed some static kwargs appearing in sphinx
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fa012cc
updated module docstring, changed author info, moved changelog above BSD-3 licence banner
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ebc5462
change in cell metasdata from running notebook
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c9b23df
tweak to returns description for find_min_ml to hopeuflly look better in docs
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0b0a6c0
Merge pull request #8 from Jasplet/docs
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6827649

Commits on Nov 24, 2025

fleshed out skeleton readme (needs a second readthrough before publishing).
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3703820
Merge pull request #9 from Jasplet/docs
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7aa4382
deleted deprecated debugging script
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7e5db36

Commits on Nov 25, 2025

added modelconfig, and seismic network classes
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a0c7784
removed unneeded pandas import
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afffb89
started new class for detcapmodel
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7310496
created function to add seismicnetworks objects to model
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92623af
added validation for snr and foc_depth and supported GMPE models/ types
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74639f5
rerranged functions and broguth find_min_ml into Model Class
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0d84a0e
added attributes fir number of networks/arrays/das fibres
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9a7dc45
removed kwarg handling as this has been passed off elsewhere
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e375247
made create_grid a dev function
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51517be

Commits on Nov 26, 2025

added grid params to ModelConfig with valdiation
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be96fdd
added method for running model and reworking find_ml
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cf5b5ab
sdded heler functions t make_model_kwargs and setup grid params
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0a2474a
switched to using functools.partial
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367d690
made naming of indicies more explicit and made grid point input a tuple
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0e7c022
only add networks, arrays, das_fibres to model_kwargs if they exist.
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5a3953e
set gmpe configs to None if method != "GMPE" for safety
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50506ae
renamed das_data to das_channels
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e8bfa21
made kwargs builder verbose when netowrk, arrays, or das are not included. refactoeed arrya and DAS logic following seismic networks
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87ca9d5
refactored DAS kawrgs
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4858c37
added mag_min, mag_delta and model_stacking_das to ModelConfig
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174f162
ADDED GAUGE LENGTH TO DASFIBRE
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68330e0
made kwargs needed for calc_min_ml_at_gridpoint explicit
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11afd1b
added exception if gpme kwargs are not provided
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d7022e3
removed default Nones
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34ef1e0
removed kwarg defualting in lower level functions
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53ee2f7
reordered functions
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ce69f32
added helper function to make xsection grid and refacoted find_ml_x_section
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ccf32bb
added function to setup xsection grid params in modelconfig
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c1e569a
typo fix and added seperate function to initialise xsection grid
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04b0891
re-ordered funcion and deleted deprecated wrapper func for find_min_ml_xsection wprker func
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e878dab
claude agent rewrtie of _minml_x_section_worker following the rewrite of _minml_worker
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3ffc0cb
fixed some issues wth the AI rewirte
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758f3cc
some typo fixes
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e8cd75e
changed import to reflect fucntion move
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c041668
removed underscore form create_grid
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155736e
new file to test functions form core.py
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d504392
moved read_das_df tests to test_core
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60ab735
removed tests which no lpnger capture function behaviour (warning unknown kwargs in worker funcs) and moved read_Station_data tests to test_core.py
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fb7691d
fixed error in test parameterisation
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15bd447
fixed param order issue and added missing model_karwags
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133a5ef
pruned unneeded improts
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6e02465
fixed tuple bug in minml_worker for DAS
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43cee70
fixed namespace conflict for DASFibre
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a0aca1b

Commits on Nov 27, 2025

fixed bug introduced in tests est_min_ml
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717911e
added test for ModelConfig initilialisation
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b0e4a88
updated find_min_ml tests to reflect refactoring
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74c89e9
added fallback value error for if find_min_ml is caled woth no networks etc
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727b0ac
added test for custom init
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1b776f5
added more tests for creating grid
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1997b5b
fixed expected error messages
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3ec3062
added type hinting for add_grid_params at lat/lons need to be floats
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7c30b2b
removed unneeded self
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5164bef
updated expected ValueErrors for reversed grid co-ords
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449bc06

Commits on Nov 28, 2025

removed setup.py as we have migrated to using pyproject.toml
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c72da98
new pyproject.toml initialised by uv
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4b8912c
updated licnece, authors, description
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31a1754
uv lockfile
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e9e08bb
debugged soem tests
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af7fc78
fixed pyrojet for uv
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ae0a61b
updated uv lockfile
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c30d3bc
added ruff to dev
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51035c9
added ruff config
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e47acf1
ruff linting
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4079000
added ntoebooks to extend-include
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1ed38d9
ruff linting
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702aae9
ruff linitng
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2cd4db6
updated gitignore
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ffd323a
added serting.sjson to gitignore
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2578215
added setting.json
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681f193
merged .tomls
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1d49b6d
redoreded imports
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05138d4
doctsring typo fixed
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5a125a7
escaped regex for valueerror strings
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bdc7dff
linting with ruff,
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7bf8f98
espaced regex for matvching valueerrors
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c4b3861
updated errors messages and tests for invalid n, f0
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2320619
fixed bug in get f0 octaves
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4c7a03d
update Readme
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8597ff7
changed logic so seismic network will initalisation if the same number of station as no- required detections is passed
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52b9eb6
added num_stations property
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4bbc536
added tests for SeismicNetwork
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0bf1ddd
typo fix
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d191b1a
forgot i'd alread added station_num as a property
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bbd1c3f
made test stationn daa DataFrames as expected
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bf3cb2c
standfardised dummy stationdata and added noise to Array test data
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197ccd4
made station_data longer
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605e13d
removed dupicate num_station
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4b7f606
fixed expected number of stations
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4306b16
made mepty df with column as we want tot test this case NOT a blank df
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342cabe
updated depencencies
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5aad14b
updated tests
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c6fff6f
fixed final tests
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694b361
make sure i am using self.num_stations
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e51cc4f
added examples dependencies
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242d0cc
move and renamed plotting file to exmaples
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589cc16
moved up imports in examples notebook
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218d5fc
added some more tests to plug some coverage gaps suggested by copilot
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81c0ce7
added required detections to __repr__
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597b302
added repr test and fixed expected ValueError strings
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6639ed0

Commits on Dec 1, 2025

updated pyroject.toml classifiers and target python version
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538c7fd
removed pylint workflow as not needed
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72e5020
updated workflow to use uv
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c0525fd
fixed tabel for ruff
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8afc22d
removed jupyter notebook from ruff linting until the exmaples are done
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d6c88ba
deleted duplicate empty df test
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7172189
Ruff formatting
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de27cb3

Commits on Dec 4, 2025

Commits on Dec 5, 2025

cleared out example.ipynb
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bb5a41e

Commits on Jan 21, 2026

updated numpy
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4deef21
dont need to track .vscode
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e47f232
raise valueerror for unknown case
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191206b
fix typo in module docstring
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df9de6d
updated docstring of DASFibre
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ac87fa7
flesh out docstring of main Class
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180a8a1
added fibre_code to DASFIBre so there is a unique identifier
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2b7e400
filling docstrings
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ecc7326
fixed variable name erros in DASFIbre
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badb2bb
dotn add gmpe attributes if ModelConfig method is not GMPE
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6998d6d
added pyyaml as a dependency
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a2154f6
added some type ignores
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388d567
fixed pylance warnigs
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ccaa0c6
fixed tests after tweak to DASFIbre adding fibre_code and no longer initialising gmpe methods in ModelConfig for non-gmpe methods
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93df296
typo fix
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005be20
add data for example
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012578c
only create model_kwargs for gmpe method is it is specified
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a2310db
fix to gmpe kwargs, probably needs deeper dive
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56f8972
fixzed pylance error
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a2b80d9
added pygmt to dependencies
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171098e
pygmt already exisitng in examples list
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2877445

Commits on Feb 5, 2026

Commits on Mar 3, 2026

fixed bug with printing array network codes
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d950339