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b3a3921
normalize notebooks in pre-commit
InfinityMonkeyAtWork May 28, 2026
464391e
execute docs/design/upgrade_examples.md
InfinityMonkeyAtWork May 29, 2026
6eed236
upgrade example 01 and polish slice-by-slice / 2D fit display
InfinityMonkeyAtWork May 31, 2026
5a1ced4
fully cleaned up fitting example 01
InfinityMonkeyAtWork May 31, 2026
e0492b0
standardized time-value formatting in plot titles
InfinityMonkeyAtWork Jun 2, 2026
bca62e0
fix vertical axis labels
InfinityMonkeyAtWork Jun 2, 2026
87ca516
example 01: remove all uncertainty / CI estimates
InfinityMonkeyAtWork Jun 10, 2026
65f5178
update plan: show example notebook outputs on RTD not github
InfinityMonkeyAtWork Jun 10, 2026
f19bde2
updated example 02
InfinityMonkeyAtWork Jun 10, 2026
0ffb4b2
upgrade example 03
InfinityMonkeyAtWork Jun 12, 2026
51bb342
upgrade example 04
InfinityMonkeyAtWork Jun 12, 2026
9a2de50
more accurate example 03 wording
InfinityMonkeyAtWork Jun 12, 2026
3109618
improve example 10
InfinityMonkeyAtWork Jun 12, 2026
6c0a690
example truth yamls
InfinityMonkeyAtWork Jun 12, 2026
4be3787
upgrade example 11
InfinityMonkeyAtWork Jun 12, 2026
446665a
validate first value in parameter info list is numeric (except for ex…
InfinityMonkeyAtWork Jun 19, 2026
77e4c95
rework uncertainty-estimation API and fix __lnsigma leak
InfinityMonkeyAtWork Jun 26, 2026
33e7691
update sigma naming
InfinityMonkeyAtWork Jun 26, 2026
aa0c6a4
upgrade example 12
InfinityMonkeyAtWork Jun 26, 2026
19def3a
improve example 11 working
InfinityMonkeyAtWork Jun 26, 2026
bef2e8d
improve example 12 wording
InfinityMonkeyAtWork Jun 26, 2026
12efa82
mcmc table cleanup
InfinityMonkeyAtWork Jun 26, 2026
d43e8f6
upgrade example 20
InfinityMonkeyAtWork Jun 26, 2026
427f5d2
upgrade example 21
InfinityMonkeyAtWork Jun 29, 2026
f451398
create skill to check new examples
InfinityMonkeyAtWork Jul 1, 2026
f2d0ff7
update the archive document
InfinityMonkeyAtWork Jul 1, 2026
4bddb61
need to fix the dev tool versions sooner rather than later
InfinityMonkeyAtWork Jul 1, 2026
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4 changes: 2 additions & 2 deletions .claude/skills/benchmark/benchmark_gir.py
Original file line number Diff line number Diff line change
Expand Up @@ -564,7 +564,7 @@ def bench_fit(example_num, dynamics_calls, *, n_reps=3):
elif args.nfev:
if args.example == 0:
totals: dict[int, int | str] = {}
for n in range(1, 6):
for n in range(1, 5):
print()
print("=" * 60)
print(f"NFEV CAPTURE -- example {n:02d}")
Expand All @@ -589,7 +589,7 @@ def bench_fit(example_num, dynamics_calls, *, n_reps=3):
elif args.plan_time:
if args.example == 0:
ratios: dict[int, str] = {}
for n in range(1, 6):
for n in range(1, 5):
print()
print("=" * 60)
print(f"PLAN-TIME CAPTURE -- example {n:02d}")
Expand Down
15 changes: 15 additions & 0 deletions .claude/skills/check-example/SKILL.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
---
name: check-example
description: Audit an examples/fitting_workflows notebook against the gold-standard quality bar before a merge or release.
disable-model-invocation: true
---

Use [../../../docs/ai/check-example.md](../../../docs/ai/check-example.md) as
the source of truth for this skill.

This skill takes one argument: the example to audit, as a directory path or an
`NN_` prefix under `examples/fitting_workflows/` (e.g. `04`,
`04_parameter_profiles`, or a full path). With no argument, audit every
`examples/fitting_workflows/NN_*/` directory.

When this wrapper and the shared doc differ, follow the shared doc.
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