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@IPNP-BIPN

IPNP-BIPN

🧬💻 BIPN: Bioinformatics for psychiatry & neuroscience—data analysis, omics, tools, and collaboration.

Bioinformatics In Psychiatry and Neuroscience

INSERM U1266 Institut de Psychiatrie et Neuroscience de Paris - BIPN is dedicate to conceptualize user needs in bioinformatics, to process data and to interpret the results from High-throughput projects in the specific fields of neuroscience and psychiatry. The platform is able to develop omics’ molecular analyses (genomics with Genome-wide Association study or Polygenic risk score, methylomics, trancriptomics, proteomics). Another mission of the platform is to maintain and transmit the adequate tools, coding and computer resources to manage data flows, storage and accessibility.

BIPN has expertise for Collection, Processing, Analysis and interpretation In different domains

Category Details
Data Management Data Warehousing, Data Architecture, Data Bases, Data Transformation, Languages
Languages Linux, Python, SQL, R
Computer Tools CellRanger, Plink, PRSice2, Minfi, Kallisto, Bismark, ENSEMBL-VEP
Transmission Generate scripts, Create tutorials, Design analysis, Teaching computer tools
Collaborations with IPNP Teams Team Krebs, Team Gorwood/Ramoz, Team Oppenheim, GHU Paris (Anatomopathology)
External Collaborations PEPR-PROPSY, CNRGH, Institut Imagine, Private companies (Diagenode, Integragen)
IPNP Facilities 1 NAS DS1819+ (48 To of storage), 1 Working station (1 To of RAM & 88 CPUs), research engineer : Benjamin Demaille

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  1. bwa-mem4 bwa-mem4 Public

    Native Rust reimplementation of the bwa-mem2 short-read aligner (byte-identical target, GPU planned). Work in progress. Not the official bwa-mem2.

    Rust 15 1

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