neuroatlas-prep is a unified, pre-deformation preparation pipeline for multiple brain atlases.
neuroatlas-prep standardizes how atlas data is fetched, converted into mesh
parts, validated, and exported as stable prepared outputs. It is designed to support reproducible atlas preparation ahead of downstream deformation, particularly for AR use.
| Species | Atlas ID | Version |
|---|---|---|
| mouse | allen | CCFv3 |
| rat | waxholm | v4.0 |
| marmoset | mbm | v3.0.1 |
| macaque | d99 | v2.0 |
| human | cerebra | v1.0 |
| Doc | Contents |
|---|---|
| practical_use.md | Setup, core commands, output locations, troubleshooting |
| downloads.md | Per-atlas fetch sources and expected raw files |
| extractors.md | Extractor responsibilities and per-atlas pipelines |
| add_new_brain_atlas.md | Checklist for adding a new atlas preset |
| design_principles.md | Architecture, module ownership, and output contracts |
- Sander Tøkje Hauge
- Martin Hegnum Johannessen
MIT License. See LICENSE.
If you use this software, please cite it using the metadata in CITATION.cff.