Use r-universe workflow for R CMD check and BiocCheck

[Bisaloo]

No description provided.

[Artur-man]

Put a BioC check on top ? perhaps for only ubuntu or mac.

      - name: Run BiocCheck
        env:
          DISPLAY: 99.0
        run: |
          BiocCheck::BiocCheck(
              dir('check', 'tar.gz$', full.names = TRUE),
              `quit-with-status` = TRUE,
              `no-check-R-ver` = TRUE,
              `no-check-bioc-help` = TRUE,
              `no-check-remotes` = TRUE
          )
        shell: Rscript {0}

[Bisaloo]

My preference would be to have BiocCheck in a separate workflow. I find it cleaner and it keeps the R CMD check workflow quasi-identical to the upstream in r-lib/actions, thus making updates easier.

Same for pkgdown, etc. These are conceptually distinct tasks.

What do you think?

[HelenaLC]

I agree. Just another thought: what about the r-universe action? My understanding was that that'll replace all of it soon?

[HelenaLC]

Speaking of which, how do I find the GitHub pages deployment?

[Bisaloo]

Good idea! We're now using the r-universe workflow for R CMD check and BiocCheck.