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Pull requests: HannesStark/boltzgen

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Pull requests list

Use native MPS SVD when available; document MPS usage in README
#261 opened Jul 10, 2026 by fnachon Loading…
Fix macOS libomp conflict properly instead of silencing it
#260 opened Jul 10, 2026 by fnachon Loading…
Exclude non-standard residues from ConsecutiveCA filter
#259 opened Jul 10, 2026 by fnachon Loading…
Force float32 precision on CPU/MPS instead of bf16-mixed
#258 opened Jul 10, 2026 by fnachon Loading…
Raise a clear error on invalid ligand SMILES instead of crashing
#257 opened Jul 10, 2026 by fnachon Loading…
Fix visited-set shape in paired MSA construction
#256 opened Jul 10, 2026 by fnachon Loading…
Assign label_seq to every subchain of a multi-chain PDB entity
#255 opened Jul 10, 2026 by fnachon Loading…
1
Guard get_delta_sasa against empty atom selections
#254 opened Jul 10, 2026 by fnachon Loading…
1
Match writer's best-sample metric to analyze's
#253 opened Jul 10, 2026 by fnachon Loading…
1
Fix num_filters_passed to count individually-passing filters
#252 opened Jul 10, 2026 by fnachon Loading…
1
Repeat fake_atom_weight by multiplicity in diffusion loss
#251 opened Jul 10, 2026 by fnachon Loading…
Compute delta SASA against designed chain(s), not designed residues
#250 opened Jul 10, 2026 by fnachon Loading…
1
Close file handles in writer.py instead of relying on GC
#249 opened Jul 10, 2026 by fnachon Loading…
1
Remove duplicate ligand_iptm entry in eval_keys_confidence
#248 opened Jul 10, 2026 by fnachon Loading…
1
Fix PDB parsing for multi-chain polymers
#237 opened May 27, 2026 by ryanhulke Loading…
1
Fix O(N^2) serialization in analysis step
#235 opened May 26, 2026 by rhyschappell Contributor Loading…
Fix silent bug in diffusion loss (fake_atom_weight not repeated)
#230 opened May 20, 2026 by gdesjardins Loading…
Use antibody liability modality for nanobody/antibody protocols instead of peptide default
#229 opened May 19, 2026 by chr-wn Loading…
Add docker image build and publish workflow
#210 opened Apr 13, 2026 by chAwater Contributor Loading…
1
fix: bug in num_filters_passed counting
#203 opened Mar 18, 2026 by chAwater Contributor Loading…
2
fix: improve error handling when no designed residues found
#174 opened Feb 3, 2026 by buerbaumer Contributor Loading…
4 tasks done
docs: Add examples guide with structured overview and navigation
#173 opened Feb 1, 2026 by buerbaumer Contributor Loading…
Fix analysis crash when SASA atom selection is empty - Small molecule example
#167 opened Jan 26, 2026 by juliocesar-io Loading…
Fix atom_to_token remapping for variable insertions in visibility=1 scaffolds, respect defined structure_groups visibility and constraint validation for file entities, and CIF writer
#155 opened Jan 15, 2026 by cmoscy Loading…
Improved metrics error handling, stricter regex patterns, and better file closing
#152 opened Jan 14, 2026 by y1zhou Contributor Loading…
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