ContVAR pretrained weights v1.0.0

Downloads

Asset	Size (approx.)	Use case
contvar-weights-phase0-v1.0.0.zip	~14 MB	GO semantic pretraining encoder checkpoint
contvar-weights-phase1-v1.0.0.zip	~28 MB	DMS-finetuned ContVAR encoder checkpoints
contvar-weights-phase2-decoders-concat-full-best-v1.0.0.zip	~138 MB	Recommended for inference — concat full-best decoders (MF/BP/CC) + GO vocabs
contvar-weights-phase2-decoders-v1.0.0.zip	~836 MB	Full Phase 2 baseline set (all decoder variants) + GO vocabs

Extract each zip into the repository root so paths resolve as model_weigths/....

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Contents

Phase 0 — GO semantic pretraining

(contvar-weights-phase0-v1.0.0.zip)

• model_weigths/phase0_go_pretraining/model_go_pretraining_best_loss.pt

Phase 1 — DMS encoder finetuning

(contvar-weights-phase1-v1.0.0.zip)

• model_weigths/phase1_dms_finetuning/phase1_model_best_loss.pt
• model_weigths/phase1_dms_finetuning/phase1_model_last_loss.pt

Phase 2 — GO decoders (per ontology: MF, BP, CC)

Recommended for inference (contvar-weights-phase2-decoders-concat-full-best-v1.0.0.zip):

• model_weigths/phase2_decoder/mf/decoder_best_concat_full_best_f.pt
• model_weigths/phase2_decoder/bp/decoder_best_concat_full_best_p.pt
• model_weigths/phase2_decoder/cc/decoder_best_concat_full_best_c.pt

Full baseline set (contvar-weights-phase2-decoders-v1.0.0.zip):
All decoder variants included: contvar, esm, concat, full_best, full_last.

GO vocabularies

Included in both Phase 2 zips:

• model_weigths/go_vocabs/go_vocab_f.json
• model_weigths/go_vocabs/go_vocab_p.json
• model_weigths/go_vocabs/go_vocab_c.json