A repository for the code used for the analysis within the paper "A cellular stress response induced by the CRISPR/dCas9 activation system is not heritable through cell divisions."
Alignment.md details the alignment of our HEK293T data
DEG_Analysis.rmd details the differentially expressed gene analysis for HEK293T
DEG_SKOV3_Analysis.rmd details the DEG analysis for SKOV3 cells and the comparison to HEK293T cells.
Off-target_analysis.rmd details the how potential off-target effects of the activation system were assessed.