Automatic workflow for generating individual image files and extracting droplet count(s) of droplet data (ddPCR) acquired with Countess slides on the microscope.
This repo contains a single example file (and current output in the designated subfolder).
- Generate a new branch for your specific work
- Clone the new branch
- In MATLAB
- The main code "RUN_CODE_DROPLET_ANALYSIS" calls all other functions
- Update the main code with relevant inputs
The circles overlap remover implemented here is adapted from:
Elad (2021). Circles overlap remover (https://www.mathworks.com/matlabcentral/fileexchange/42370-circles-overlap-remover), MATLAB Central File Exchange. Retrieved August 2, 2021.
which calls: Nicolas (2021). Snip.m Snip elements out of vectors/matrices (https://www.mathworks.com/matlabcentral/fileexchange/41941-snip-m-snip-elements-out-of-vectors-matrices), MATLAB Central File Exchange. Retrieved August 2, 2021.