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6 changes: 3 additions & 3 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -12,14 +12,14 @@ WORKDIR /workspace/molecular-design
COPY . .

# hack: We need to use the pypi toxsmi package, not the default one
RUN pip uninstall --yes toxsmi && pip install toxsmi && mkdir data
RUN pip uninstall --yes toxsmi && pip install toxsmi && mkdir -p data

# hack: should be done in base gt4sd
RUN pip uninstall --yes torch-scatter torch-sparse torch-cluster torch-geometric && \
pip install --no-index torch-scatter -f https://pytorch-geometric.com/whl/torch-1.12.0+cpu.html && \
pip install --no-index torch-sparse -f https://pytorch-geometric.com/whl/torch-1.12.0+cpu.html && \
pip install --no-index torch-sparse -f https://pytorch-geometric.com/whl/torch-1.12.0+cpu.html && \
pip install --no-index torch-cluster -f https://pytorch-geometric.com/whl/torch-1.12.0+cpu.html && \
pip install torch-geometric -f https://pytorch-geometric.com/whl/torch-1.12.0+cpu.html
pip install torch-geometric==2.2.0 -f https://pytorch-geometric.com/whl/torch-1.12.0+cpu.html

RUN chmod +x example_pipeline.sh

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