This fork of the FLAIR version 2.0 release was created to incorporate the fix to the gtf-parsing issue in src/flair/gtf_to_bed.py that was fixed in commit bb6f835; The aim is to fix this specific issue without altering any other behaviour of FLAIR beyond the 2.0 release, and to provide a reproducible way of running this version.
To run this, clone this repository and follow the instructions in the FLAIR documentation section on "Other environments" and "Download the latest release": https://flair.readthedocs.io/en/latest/other_environments.html