fesom2_test_refactoring: add XIOS 2.5 at /xios for upcoming xios run-test

fesom2_test_refactoring/Dockerfile

@@ -12,7 +12,8 @@ RUN apt-get update \
   && apt-get -y install cmake vim git git-lfs libnetcdf-dev libnetcdff-dev libpmix-dev libpmi2-0-dev libpmi2-0t64 \
   && apt-get -y install wget \
   && apt-get -y install nco cdo netcdf-bin \
-  && apt-get -y install python3-pip python3-tk libudunits2-dev libproj-dev proj-bin libgeos-dev libcunit1-dev
+  && apt-get -y install python3-pip python3-tk libudunits2-dev libproj-dev proj-bin libgeos-dev libcunit1-dev \
+  && apt-get -y install libhdf5-dev perl uuid-dev
 
 WORKDIR /fesom/
 
@@ -34,6 +35,31 @@ RUN pip install 'setuptools<80' \
 WORKDIR /fesom/
 RUN mkdir results
 
+# XIOS 2.5: copy source + make_xios build to /xios. Sequential NetCDF is
+# sufficient because the run-tests use XIOS in attached mode (no separate
+# server ranks). The xios/ directory below is duplicated from
+# fesom2_ci/xios/ — keep them in sync if the XIOS source ever needs to be
+# refreshed.
+#
+# Two arch-GCC_LINUX overrides:
+#   - .env: upstream hardcodes $HOME/hdf5 and $HOME/netcdf4; rewrite to Ubuntu
+#     serial library paths so make_xios's `source arch.env` gives valid roots.
+#   - .fcm: upstream BASE_CFLAGS sets -ansi (= C++98) which forbids C++11
+#     lambdas as template args. XIOS 2.5 uses those (e.g. distribute_file_server2.cpp).
+#     Append -std=c++11 to override -ansi for C++ compilation.
+COPY xios /xios
+RUN printf '%s\n' \
+        'export HDF5_INC_DIR=/usr/include/hdf5/serial' \
+        'export HDF5_LIB_DIR=/usr/lib/x86_64-linux-gnu/hdf5/serial' \
+        'export NETCDF_INC_DIR=/usr/include' \
+        'export NETCDF_LIB_DIR=/usr/lib/x86_64-linux-gnu' \
+        > /xios/arch/arch-GCC_LINUX.env \
+    && sed -i 's|^%BASE_CFLAGS .*|%BASE_CFLAGS    -ansi -w -fPIC -std=c++11|' \
+        /xios/arch/arch-GCC_LINUX.fcm \
+    && cd /xios \
+    && ./make_xios --arch GCC_LINUX --fcm new \
+                   --netcdf_lib netcdf4_seq --job $(nproc)
+
 
 
 

fesom2_test_refactoring/xios/..bfg-report/2024-05-23/17-22-49/cache-stats.txt

@@ -0,0 +1,4 @@
+(apply,CacheStats{hitCount=3211, missCount=2466, loadSuccessCount=2456, loadExceptionCount=0, totalLoadTime=161060158891, evictionCount=0})
+(tree,CacheStats{hitCount=16327, missCount=6034, loadSuccessCount=4808, loadExceptionCount=0, totalLoadTime=267214651457, evictionCount=0})
+(commit,CacheStats{hitCount=1236, missCount=1236, loadSuccessCount=1236, loadExceptionCount=0, totalLoadTime=14504775704, evictionCount=0})
+(tag,CacheStats{hitCount=0, missCount=0, loadSuccessCount=0, loadExceptionCount=0, totalLoadTime=0, evictionCount=0})

fesom2_test_refactoring/xios/..bfg-report/2024-05-23/17-22-49/deleted-files.txt

@@ -0,0 +1,5 @@
+23041028674d6ca9279dafd1daf2609da1e31af3 13588480 boost.tar
+1bb303eae7ca299e508a252719bc328444408274 177270166 test_client.exe
+3152c1bdb8fd6b7edb8a607b34032269684a448a 166236380 xios_server.exe
+48e23024e402a71a1abafa81674b4f731e5be8d0 166236419 xios_server1.exe
+6c3c76fe8e2c0621ceed0f582586a966100886ea 166236419 xios_server2.exe

fesom2_test_refactoring/xios/..bfg-report/2024-05-23/17-23-19/cache-stats.txt

@@ -0,0 +1,4 @@
+(apply,CacheStats{hitCount=3957, missCount=2978, loadSuccessCount=2970, loadExceptionCount=0, totalLoadTime=163190529522, evictionCount=0})
+(tree,CacheStats{hitCount=16558, missCount=6409, loadSuccessCount=4817, loadExceptionCount=0, totalLoadTime=221567927113, evictionCount=0})
+(commit,CacheStats{hitCount=1751, missCount=1750, loadSuccessCount=1750, loadExceptionCount=0, totalLoadTime=41462232503, evictionCount=0})
+(tag,CacheStats{hitCount=0, missCount=0, loadSuccessCount=0, loadExceptionCount=0, totalLoadTime=0, evictionCount=0})

fesom2_test_refactoring/xios/..bfg-report/2024-05-23/17-23-19/deleted-files.txt

@@ -0,0 +1,4 @@
+1bb303eae7ca299e508a252719bc328444408274 177270166 test_client.exe
+3152c1bdb8fd6b7edb8a607b34032269684a448a 166236380 xios_server.exe
+48e23024e402a71a1abafa81674b4f731e5be8d0 166236419 xios_server1.exe
+6c3c76fe8e2c0621ceed0f582586a966100886ea 166236419 xios_server2.exe

fesom2_test_refactoring/xios/.void_file

@@ -0,0 +1 @@
+