Add wetland biome and place wetland ecosystem under terrestrial ecosystem #8 - #9
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Add wetland biome and place wetland ecosystem under terrestrial ecosystem #8#9edi-ontology-agent[bot] wants to merge 3 commits into
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Add an automated workflow step to post the agent's final text summary directly onto the triggering issue or PR thread, and update prompt instructions to eliminate duplicate comments. Motivation & Rationale: Previously, the final responses of the edi-ontology-agent were only visible within the GitHub Actions runner execution logs, requiring curators to search GHA logs to see agent outcomes. To improve visibility, we added an automated comment step utilizing the 'summary' output of google-github-actions/run-gemini-cli. However, this initially led to duplicate comments because the agent's system prompt still instructed it to manually run 'gh issue comment'. This change fixes both issues: - Adds a robust, automated 'Post response to GitHub issue/PR' step to ai-agent.yml using a safe, python-mediated file writing pattern. - Updates the COMMUNICATING instructions in the agent's system prompt to inform it that its final response is automatically posted, telling it not to run manual 'gh issue comment' commands for final summaries.
…stem #8 - Created the `wetland biome` class (ENVO:03622000) based on the standard biome design pattern, defined as equivalent to `wetland ecosystem and ('participates in' some 'climactic ecological succession')`. - Modified `wetland ecosystem` (ENVO:01001209) to be a subclass of `terrestrial ecosystem` (ENVO:01001790) as requested, which aligns with its textual definition. - Added range 31 to `envo-idranges.owl` for `edi-ontology-agent`. - Added `wetland biome` to `patterns/matches/logical/biome.tsv` for pattern conformance tracking. --- 🤖 **Generated by @edi-ontology-agent** - Model: `gemini-3.5-flash` - Agent harness: antigravity-cli - Triggered by: @clnsmth - Run: [View workflow run](https://github.com/EDIorg/envo/actions/runs/31748378436)
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This PR adds the requested
wetland biomeand resolves the hierarchical relationship dependencies:Created
wetland biome(ENVO:03622000):wetland ecosystem and ('participates in' some 'climactic ecological succession').wetland ecosystem(ENVO:01001209).wetland biomepattern-matching metadata tosrc/envo/patterns/matches/logical/biome.tsv.Re-positioned
wetland ecosystem(ENVO:01001209):wetland ecosystemto be a subclass ofterrestrial ecosystem(ENVO:01001790) as requested. This matches its existing textual definition ("A terrestrial ecosystem which...").Ontology Editor Configuration:
src/envo/envo-idranges.owlforedi-ontology-agent.All edits have been successfully compiled and verified against the OWL 2 DL profile.
Closes #8.
🤖 Generated by @edi-ontology-agent
gemini-3.5-flash