Girder 5 upgrade 2026

.dockerignore

@@ -3,11 +3,14 @@
 .gitattributes
 dive-dsa-slicer/
 scripts/
+!server/scripts/build_release_assets.sh
 testutils/
 # Documentation
 docs/
 *.md
 README*
+!server/README.md
+!test_deployment/README.md
 
 # Development files
 .vscode/
@@ -25,6 +28,7 @@ __pycache__/
 build/
 develop-eggs/
 dist/
+!server/dist/
 downloads/
 eggs/
 .eggs/
@@ -87,10 +91,13 @@ Thumbs.db
 /tmp/
 /var/tmp/
 
-# Docker
+# Docker (compose/Dockerfiles are read from the host; keep entrypoints in context)
 Dockerfile*
+!test_deployment/Dockerfile
 docker-compose*.yml
+!test_deployment/docker-compose.yml
 .dockerignore
+!test_deployment/entrypoint_*.sh
 
 # CI/CD
 .github/

.env.Default

@@ -1,2 +1,52 @@
-# Add in your userId:groupId for docker slicer cli plugin access
-DSA_USER="userId:groupId"
+# DIVE-DSA Configuration Template
+# Create a copy of this file called .env
+
+# Docker Compose Stack configuration
+#
+#COMPOSE_PROJECT_NAME=dive-dsa
+#COMPOSE_PROFILES=gpu
+
+# DSA user for slicer CLI docker socket access (required)
+DSA_USER="userId:groupId"
+
+# MongoDB Configuration
+#
+#MONGO_DB_PATH=/opt/dive/mongo/data/db
+
+# Web server configuration
+#
+#GIRDER_ADMIN_USER=admin
+#GIRDER_ADMIN_PASS=letmein
+
+# Girder Worker / Celery (Girder 5 — replaces CELERY_BROKER_URL and WORKER_API_URL)
+#
+#RABBITMQ_DEFAULT_USER=guest
+#RABBITMQ_DEFAULT_PASS=guest
+#RABBITMQ_DEFAULT_VHOST=default
+#GIRDER_WORKER_BROKER=amqp://guest:guest@rabbit/default
+#GIRDER_WORKER_BACKEND=rpc://guest:guest@localhost/
+#GIRDER_SETTING_WORKER_API_URL=http://girder:8080/api/v1
+#GIRDER_NOTIFICATION_REDIS_URL=redis://redis:6379
+
+# Docker image tag
+#TAG=latest
+
+# RabbitMQ User Queue configs
+#
+#RABBITMQ_MANAGEMENT_USERNAME=guest
+#RABBITMQ_MANAGEMENT_PASSWORD=guest
+#RABBITMQ_MANAGEMENT_VHOST=default
+#RABBITMQ_MANAGEMENT_URL="http://rabbit:15672/"
+#RABBITMQ_MANAGEMENT_BROKER_URL_TEMPLATE="amqp://{}:{}@rabbit/default"
+
+# Production data bind paths
+#
+#PUBLIC_DATA_PATH=./docker/girder_data
+
+# Worker Concurrency
+#
+#DEFAULT_WORKER_CONCURRENCY=3
+
+# Split or standalone worker: remote Girder API (replaces legacy WORKER_API_URL)
+#GIRDER_SETTING_WORKER_API_URL=https://your-server.example.com/api/v1
+#SOCK_PATH=/var/run/docker.sock

.github/workflows/CI.yml

@@ -69,3 +69,34 @@ jobs:
     - name: Run tests
       run: tox -e testunit
       working-directory: server
+
+  build-wheel:
+    name: Build dive_server wheel
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - uses: actions/setup-node@v4
+        with:
+          node-version: '24'
+          cache: npm
+          cache-dependency-path: |
+            client/package-lock.json
+            server/dive_server/web_client/package-lock.json
+
+      - uses: astral-sh/setup-uv@v6
+        with:
+          enable-cache: true
+          cache-dependency-glob: server/uv.lock
+
+      - name: Build and verify wheel
+        run: bash server/scripts/build_wheel.sh
+
+      - name: Upload wheel artifact
+        uses: actions/upload-artifact@v4
+        with:
+          name: dive-dsa-wheel
+          path: server/dist/dive_dsa-*.whl
+          if-no-files-found: error

.github/workflows/release-dive-server.yml

@@ -0,0 +1,41 @@
+name: PyPI Publish dive-dsa
+on:
+  workflow_dispatch:
+  release:
+    types: [published]
+
+permissions:
+  id-token: write  # Required for PyPI trusted publishing (OIDC)
+  contents: read
+  actions: write   # Upload wheel artifact
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v6
+        with:
+          fetch-depth: 0
+          # Prefer the release tag so uv-dynamic-versioning yields a clean PEP 440 version.
+          ref: ${{ github.event.release.tag_name || github.ref }}
+
+      - uses: actions/setup-node@v6
+        with:
+          node-version: '24'
+          package-manager-cache: false
+
+      - uses: astral-sh/setup-uv@v6
+        with:
+          enable-cache: false
+
+      - name: Build, verify, and publish wheel
+        # build_wheel.sh refuses versions with +local (PyPI), cleans dist/, then uv publish.
+        # OIDC trusted publishing provides credentials in GITHUB_ACTIONS; no token needed.
+        run: bash server/scripts/build_wheel.sh --publish
+
+      - name: Upload wheel artifact
+        uses: actions/upload-artifact@v4
+        with:
+          name: dive-dsa-wheel
+          path: server/dist/dive_dsa-*.whl
+          if-no-files-found: error

.gitignore

@@ -1 +1,3 @@
 .env
+# Synced at runtime in development containers
+server/dive_server/dive_client/

client/.env.production

@@ -1 +1 @@
-VUE_APP_STATIC_PATH=./static/dive/
+VUE_APP_STATIC_PATH=/dive/static

client/dive-common/components/Viewer.vue

@@ -842,6 +842,12 @@ export default defineComponent({
             description: 'Slicer Tasks',
             component: SlicerTaskRunnerVue,
           });
+        } else {
+          context.register({
+            description: 'Slicer Tasks',
+            component: SlicerTaskRunnerVue,
+            width: 500,
+          });
         }
 
         if (!configurationManager.getUISetting('UIGroupManager')) {

client/dive-common/use/useRequest.ts

@@ -1,5 +1,5 @@
 import { reactive, shallowRef, toRefs } from 'vue';
-import { AxiosResponse } from '@girder/components/node_modules/axios';
+import { AxiosResponse } from 'axios';
 import { getResponseError } from 'vue-media-annotator/utils';
 
 export default function useRequest() {

client/dive-common/vue-utilities/prompt-service/index.ts

@@ -65,14 +65,41 @@ class PromptService {
     positiveButton = 'Confirm',
     negativeButton = 'Cancel',
     confirm = false,
+    maxWidth = '400px',
   }: PromptParams): Promise<boolean> {
     return new Promise<boolean>((resolve) => {
       if (!this.component.show) {
-        this.set(title, text, positiveButton, negativeButton, confirm, resolve);
+        this.set(
+          title,
+          text,
+          positiveButton,
+          negativeButton,
+          confirm,
+          resolve,
+          undefined,
+          undefined,
+          undefined,
+          undefined,
+          undefined,
+          maxWidth,
+        );
       } else {
         const unwatch = watch(this.component.show, () => {
           unwatch();
-          this.set(title, text, positiveButton, negativeButton, confirm, resolve);
+          this.set(
+            title,
+            text,
+            positiveButton,
+            negativeButton,
+            confirm,
+            resolve,
+            undefined,
+            undefined,
+            undefined,
+            undefined,
+            undefined,
+            maxWidth,
+          );
         });
       }
     });