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Merged
daurer merged 1 commit into from
Jul 24, 2026
Merged

Null to Nil #286

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6 changes: 3 additions & 3 deletions i14/templates/xrf-tomo-template.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ spec:
- name: normalise
value: true
- name: cor
value: "null"
value: "nil"
- name: reconsMethod
value: "FBP"
volumeClaimTemplates:
Expand Down Expand Up @@ -301,9 +301,9 @@ spec:
mkdir -p $OUTPUT/httomo_output

COR_ESTIMATE="{{`{{ inputs.parameters.initcor }}`}}"
[[ $COR_ESTIMATE != "null" ]] && sed -i 's/<INITCOR>/'"${COR_ESTIMATE}"'/' $OUTPUT/httomo.yaml
[[ $COR_ESTIMATE != "nil" ]] && sed -i 's/<INITCOR>/'"${COR_ESTIMATE}"'/' $OUTPUT/httomo.yaml
COR="{{`{{ workflow.parameters.cor }}`}}"
[[ $COR != "null" ]] && sed -i 's/${{`{{centering.side_outputs.centre_of_rotation}}`}}/'"${COR}"'/' $OUTPUT/httomo.yaml
[[ $COR != "nil" ]] && sed -i 's/${{`{{centering.side_outputs.centre_of_rotation}}`}}/'"${COR}"'/' $OUTPUT/httomo.yaml

cmd=(/opt/conda/bin/mpirun -n 1 /opt/conda/bin/python -m httomo run)
cmd+=("--output-folder-name=${ELEMENT}-${TRANSITION}")
Expand Down