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Cancer Deep Phenotype Extraction, Translational Medicine (DeepPhe-XN)

Getting started

We suggest you start with the introduction to the DeepPhe-XN system.

Requirements

• Java 8. Installed desktop bundles usually provide their own Java runtime.

Installing DeepPhe-XN

If you are ready to move on, Download and Install the software.

After Installation

Once you have the correct installation installed you should be ready to try some example files. Step-by-step guides describe how you can launch the DeepPhe Desktop GUI or run a DeepPhe pipeline from the command-line.

Specifying and Interpreting Output

DeepPhe-XN can provide detailed information in multiple formats. Learn how to specify and interpret outputs.

Beyond the basics

If you are looking for more detailed information beyond installation or a quickstart tutorial, you can take a look through the links available on the right side of the screen.

Apache cTAKES

The DeepPhe NLP software is built on top of Apache cTAKES.
Information about pipelines, piper files, and the Piper File Submitter GUI can be found in the cTAKES WIKI.