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Feature/folder upload#160

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maubreville merged 5 commits into
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feature/folder-upload
Jun 9, 2026
Merged

Feature/folder upload#160
maubreville merged 5 commits into
masterfrom
feature/folder-upload

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This is a bugfix for dicom sequences from Mauna Key CellVizio.

maubreville and others added 5 commits June 9, 2026 11:32
Uploads a whole folder via a two-step API: each file is streamed to a
temp directory via upload_folder_chunk, then upload_folder_finalize
detects the format, splits DICOM files by SeriesInstanceUID (one Image
per series), assembles MRXS + its data directory, and delegates to the
existing save_file() pipeline.

SlideIOSlide and getSlideHandler are extended to open DICOM series
directories (passing driver='DCM' to slideio), so tile-serving works
transparently once the directory is stored in the imageset root.

Both imageset templates gain an "Upload Folder" button wired to a
webkitdirectory file input and a small vanilla-JS upload loop.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@maubreville maubreville merged commit aff92cd into master Jun 9, 2026
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