piescope_gui v0.2.0 by patrickcleeve2 · Pull Request #22 · DeMarcoLab/piescope_gui

patrickcleeve2 · 2022-03-25T00:22:04Z

This pull request upgrades piescope_gui to version 0.2.0

Features include:

Updated user interface
Hardware connection buttons and indicators.
Improved volume imaging
Improved milling

… volume height

… more options for volume parametrisation

…ructured-Illumination # Conflicts: # piescope_gui/qtdesigner_files/main.py # piescope_gui/qtdesigner_files/main.ui

Co-authored-by: DavidDierickx <DavidDierickx@users.noreply.github.com>

pep8speaks · 2022-03-25T00:22:10Z

Hello @patrickcleeve2! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

In the file piescope_gui/correlation/main.py:

Line 28:1: E302 expected 2 blank lines, found 1
Line 30:80: E501 line too long (113 > 79 characters)
Line 35:22: E225 missing whitespace around operator
Line 63:80: E501 line too long (95 > 79 characters)
Line 100:80: E501 line too long (80 > 79 characters)
Line 144:80: E501 line too long (133 > 79 characters)

In the file piescope_gui/main.py:

Line 15:80: E501 line too long (81 > 79 characters)
Line 39:5: E301 expected 1 blank line, found 0
Line 56:5: E266 too many leading '#' for block comment
Line 69:80: E501 line too long (81 > 79 characters)
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Line 72:80: E501 line too long (145 > 79 characters)
Line 73:80: E501 line too long (106 > 79 characters)
Line 73:82: E221 multiple spaces before operator
Line 76:5: E303 too many blank lines (2)
Line 164:5: E303 too many blank lines (2)
Line 235:5: E266 too many leading '#' for block comment
Line 253:80: E501 line too long (92 > 79 characters)
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Line 299:13: E122 continuation line missing indentation or outdented
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Line 774:5: E266 too many leading '#' for block comment
Line 884:80: E501 line too long (93 > 79 characters)
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Line 893:23: E261 at least two spaces before inline comment
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Line 1026:5: E266 too many leading '#' for block comment
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Line 1117:29: E261 at least two spaces before inline comment
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Line 1118:40: E203 whitespace before ','
Line 1119:80: E501 line too long (91 > 79 characters)
Line 1120:31: E225 missing whitespace around operator
Line 1120:32: E203 whitespace before ':'
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Line 1120:46: E225 missing whitespace around operator
Line 1120:47: E203 whitespace before ':'
Line 1120:52: E225 missing whitespace around operator
Line 1129:44: W291 trailing whitespace
Line 1142:80: E501 line too long (80 > 79 characters)
Line 1161:9: E303 too many blank lines (2)
Line 1170:80: E501 line too long (81 > 79 characters)
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Line 1182:80: E501 line too long (83 > 79 characters)
Line 1204:80: E501 line too long (106 > 79 characters)
Line 1206:1: W293 blank line contains whitespace
Line 1209:80: E501 line too long (89 > 79 characters)
Line 1222:80: E501 line too long (131 > 79 characters)
Line 1226:80: E501 line too long (124 > 79 characters)
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Line 1288:5: E266 too many leading '#' for block comment
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Line 1464:80: E501 line too long (98 > 79 characters)
Line 1483:1: E302 expected 2 blank lines, found 1
Line 1492:80: E501 line too long (90 > 79 characters)

In the file piescope_gui/milling.py:

Line 29:1: E302 expected 2 blank lines, found 1
Line 34:80: E501 line too long (89 > 79 characters)
Line 47:60: W291 trailing whitespace
Line 59:80: E501 line too long (94 > 79 characters)
Line 60:80: E501 line too long (94 > 79 characters)
Line 77:80: E501 line too long (106 > 79 characters)
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Line 81:80: E501 line too long (104 > 79 characters)
Line 86:9: E303 too many blank lines (2)
Line 95:80: E501 line too long (127 > 79 characters)
Line 98:18: W291 trailing whitespace
Line 99:80: E501 line too long (122 > 79 characters)
Line 108:80: E501 line too long (130 > 79 characters)
Line 113:25: E222 multiple spaces after operator
Line 117:80: E501 line too long (92 > 79 characters)
Line 118:80: E501 line too long (96 > 79 characters)
Line 125:80: E501 line too long (123 > 79 characters)
Line 126:80: E501 line too long (123 > 79 characters)
Line 127:9: E722 do not use bare 'except'
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Line 134:80: E501 line too long (91 > 79 characters)
Line 135:80: E501 line too long (86 > 79 characters)
Line 136:80: E501 line too long (84 > 79 characters)
Line 138:80: E501 line too long (100 > 79 characters)
Line 139:80: E501 line too long (102 > 79 characters)
Line 140:80: E501 line too long (101 > 79 characters)
Line 141:80: E501 line too long (100 > 79 characters)
Line 142:80: E501 line too long (100 > 79 characters)
Line 143:1: W293 blank line contains whitespace
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Line 158:80: E501 line too long (101 > 79 characters)
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Line 169:80: E501 line too long (86 > 79 characters)
Line 173:80: E501 line too long (103 > 79 characters)
Line 174:80: E501 line too long (87 > 79 characters)
Line 176:80: E501 line too long (108 > 79 characters)
Line 178:80: E501 line too long (91 > 79 characters)
Line 179:61: E127 continuation line over-indented for visual indent
Line 179:80: E501 line too long (93 > 79 characters)
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Line 182:80: E501 line too long (81 > 79 characters)
Line 183:61: E127 continuation line over-indented for visual indent
Line 183:80: E501 line too long (113 > 79 characters)
Line 209:58: E261 at least two spaces before inline comment
Line 209:80: E501 line too long (105 > 79 characters)
Line 303:1: E303 too many blank lines (3)
Line 315:78: E202 whitespace before ')'
Line 316:78: E202 whitespace before ')'

In the file piescope_gui/qtdesigner_files/main.py:

Line 67:80: E501 line too long (83 > 79 characters)
Line 68:80: E501 line too long (108 > 79 characters)
Line 71:80: E501 line too long (112 > 79 characters)
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Line 1167:80: E501 line too long (84 > 79 characters)

In the file piescope_gui/qtdesigner_files/milling.py:

Line 11:1: E302 expected 2 blank lines, found 1
Line 34:58: E227 missing whitespace around bitwise or shift operator
Line 34:78: E227 missing whitespace around bitwise or shift operator
Line 34:80: E501 line too long (101 > 79 characters)
Line 37:80: E501 line too long (91 > 79 characters)
Line 38:80: E501 line too long (87 > 79 characters)
Line 39:80: E501 line too long (82 > 79 characters)
Line 41:57: E227 missing whitespace around bitwise or shift operator
Line 41:77: E227 missing whitespace around bitwise or shift operator
Line 41:80: E501 line too long (100 > 79 characters)
Line 50:57: E227 missing whitespace around bitwise or shift operator
Line 50:77: E227 missing whitespace around bitwise or shift operator
Line 50:80: E501 line too long (100 > 79 characters)
Line 54:57: E227 missing whitespace around bitwise or shift operator
Line 54:77: E227 missing whitespace around bitwise or shift operator
Line 54:80: E501 line too long (100 > 79 characters)
Line 57:80: E501 line too long (90 > 79 characters)
Line 58:80: E501 line too long (85 > 79 characters)
Line 59:80: E501 line too long (81 > 79 characters)
Line 66:57: E227 missing whitespace around bitwise or shift operator
Line 66:77: E227 missing whitespace around bitwise or shift operator
Line 66:80: E501 line too long (100 > 79 characters)
Line 69:80: E501 line too long (112 > 79 characters)
Line 71:80: E501 line too long (89 > 79 characters)
Line 72:80: E501 line too long (83 > 79 characters)
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Line 84:80: E501 line too long (83 > 79 characters)
Line 96:57: E227 missing whitespace around bitwise or shift operator
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Line 96:80: E501 line too long (100 > 79 characters)
Line 105:57: E227 missing whitespace around bitwise or shift operator
Line 105:77: E227 missing whitespace around bitwise or shift operator
Line 105:80: E501 line too long (100 > 79 characters)
Line 108:80: E501 line too long (84 > 79 characters)
Line 114:80: E501 line too long (90 > 79 characters)
Line 117:80: E501 line too long (85 > 79 characters)
Line 118:80: E501 line too long (81 > 79 characters)
Line 119:80: E501 line too long (92 > 79 characters)
Line 121:80: E501 line too long (81 > 79 characters)
Line 123:80: E501 line too long (95 > 79 characters)
Line 124:80: E501 line too long (87 > 79 characters)
Line 125:80: E501 line too long (113 > 79 characters)
Line 128:55: E227 missing whitespace around bitwise or shift operator
Line 128:75: E227 missing whitespace around bitwise or shift operator
Line 128:80: E501 line too long (98 > 79 characters)
Line 131:80: E501 line too long (89 > 79 characters)
Line 132:80: E501 line too long (83 > 79 characters)
Line 133:80: E501 line too long (81 > 79 characters)
Line 135:58: E227 missing whitespace around bitwise or shift operator
Line 135:78: E227 missing whitespace around bitwise or shift operator
Line 135:80: E501 line too long (101 > 79 characters)
Line 138:80: E501 line too long (84 > 79 characters)
Line 144:80: E501 line too long (113 > 79 characters)
Line 146:80: E501 line too long (113 > 79 characters)
Line 176:80: E501 line too long (83 > 79 characters)
Line 177:80: E501 line too long (80 > 79 characters)
Line 181:80: E501 line too long (85 > 79 characters)
Line 183:80: E501 line too long (89 > 79 characters)
Line 184:80: E501 line too long (84 > 79 characters)
Line 185:80: E501 line too long (84 > 79 characters)
Line 186:80: E501 line too long (91 > 79 characters)
Line 187:80: E501 line too long (107 > 79 characters)
Line 189:80: E501 line too long (81 > 79 characters)
Line 190:80: E501 line too long (91 > 79 characters)
Line 191:1: W391 blank line at end of file

In the file piescope_gui/utils.py:

Line 35:1: E302 expected 2 blank lines, found 1
Line 35:80: E501 line too long (80 > 79 characters)
Line 64:80: E501 line too long (85 > 79 characters)
Line 67:80: E501 line too long (89 > 79 characters)

Comment last updated at 2022-07-18 00:59:15 UTC

…into develop

Phases

Hamamatsu

DavidDierickx and others added 30 commits March 2, 2021 21:28

Added underscore for stop_event in live imaging

8eb9880

Added trigger_mode inputs for camera_grab function

f2c17cd

Added Pattern On, Pattern Next buttons. Changed slice number to total…

d73fb58

… volume height

Replace num_z_slices with volume_height

d4a7db0

Fixed num_z_slice calculation, added laser_dict debug log

dd4bf79

Implemented hardware triggering as default

3c71c13

added mirror on button

5cc74c2

Fixed pattern_on button

e5bb529

Fixed import of structured

56817d5

Added pattern_pin_on functionality

bf8e50f

Fixed updating of laser power when hardware triggering single image

c70641d

Fixed pattern toggling. Removed functionality for laser_on button

0daf10c

Updated GUI for structured illumination, removed stack sliders, added…

65acfcc

… more options for volume parametrisation

update to github

b17d728

Merge remote-tracking branch 'origin/Structured-Illumination' into St…

e4ca554

…ructured-Illumination # Conflicts: # piescope_gui/qtdesigner_files/main.py # piescope_gui/qtdesigner_files/main.ui

added arduino and PIStage controls

ce9f30a

fixed calibrations for mirror/shift

45ca860

Clean up GUI.init

986af02

remove mocking and fix offline start

2a6060a

add ip and oflfine to config

7af5823

remove 'this' import

0a4b4a6

remove unused imports

16a6a45

fix initialise initialize inconsiztency

285cb82

updated update_current_laser function

40e9849

update laser_dictionary to use LaserController

4187be2

remove unused mirror methods for slm

ecb88f7

send to other computer

8a03b2d

update paths

ba6d243

create github actions workflow

97278dc

update actions

a74c98b

DavidDierickx and others added 8 commits March 9, 2022 18:58

updated saving, YOLO, TODO

d41dd42

fixed stage movement, added gui elems to dataclass

0fde6ec

Co-authored-by: DavidDierickx <DavidDierickx@users.noreply.github.com>

fixed milling currents, error window

e4c5adb

fix volume imaging

f14d666

integrate the guis

04718e6

Co-authored-by: DavidDierickx <DavidDierickx@users.noreply.github.com>

fix milling patterns

1c146a7

fixed last fib image type issue

d2459c6

commets

2308842

patrickcleeve2 requested a review from DavidDierickx March 25, 2022 00:22

DavidDierickx and others added 20 commits March 25, 2022 17:04

threading issues with live imaging

fdd796c

multi-threaded live imaging fix (locks)

fe88e7d

center window on open

c14f495

fix volume saving notes

c05a6ab

change return button

e8143fb

multi-threading fix

855193c

Merge branch 'develop' of https://github.com/DeMarcoLab/piescope_gui …

b0d3eda

…into develop

fix window modal property

7ee484b

add phase selection

3f47122

updated phase movements

03a3429

Merge pull request #23 from DeMarcoLab/phases

fd29eba

Phases

change connect_to_basler to connect_to_light

49ae48d

update basler string

d41f5f1

Update detector calls

fbe85c1

[FEAT] update for hammamatsu, fix modality save location

c15adfa

[FEAT] add zoom for light imaging

fd283ac

[FEAT] add image clip

742149a

[FEAT] add histogram, adjust layout

d0b1884

Merge pull request #24 from DeMarcoLab/hamamatsu

1a636a4

Hamamatsu

doc update

fc67068

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