DeepLearning Medical

Deep Learning for Medical Image Analysis

Useful Links

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• Tools and Apps

  • Netron for model structure visualization

  • https://github.com/lutzroeder/netron

  • ITK-Snap for Medical Image Visualization

    • http://www.itksnap.org/

• Segmentation

  • The tensorflow.keras implementation of U-Net like models

    • https://github.com/yingkaisha/keras-unet-collection

  • Image Segmentation Models based on Keras and TensorFlow

    • https://github.com/qubvel/segmentation_models

  • Image Segmentation based on PyTorch

    • https://github.com/chsasank/segmentation_models.pytorch

  • 3D Brain Tumor Segmentation Example:

    • https://www.kaggle.com/code/rastislav/3d-mri-brain-tumor-segmentation-u-net/

• Transformers

  • Transformers Library and Documents
    • https://huggingface.co/docs/transformers
  • Transformers Study Guide
    • https://github.com/dair-ai/Transformers-Recipe
  • Demos made with the Transformers library by 🤗 HuggingFace
    • https://github.com/NielsRogge/Transformers-Tutorials