Split AREG into three tools, fix what the splits left stranded, and repair CI - #21

Merged

Jules-GP merged 19 commits into

mainfrom

feat/areg-ioscbct

Aug 19, 2026

Commits on Aug 18, 2026

ADD: rule that a sup.run() call must live in the tool's own src/
Jules-GP
committed
f757276
ADD: split AREG into AREG_CBCT and AREG_IOS with a shared dependency-free common package
Jules-GP
committed
b430922
FIX: split a concatenated jaw and timepoint token so patient keys and jaws resolve
Jules-GP
committed
63c0538

Commits on Aug 19, 2026

FIX: restore ALI_IOS's missing import, torch helpers, monai dependency and orphaned semaphore
Jules-GP
committed
7216a3d
ADD: AREG_IOSCBCT registering an intraoral scan onto a CBCT through the supervisor
Jules-GP
committed
e22737c
ADD: pyflakes to the repository checks to catch undefined names
Jules-GP
committed
e319145
CLEAN: replace em-dashes with plain dashes across markdown and Python sources
Jules-GP
committed
83932dd
FIX: point AREG error messages at each split tool's own data endpoint
Jules-GP
committed
4abd9bc
UPDATE: Crown_Seg install hint, now that pytorch3d ships as a prebuilt wheel
Jules-GP
committed
a98d6dd
CLEAN: drop four imports no code in these modules uses
Jules-GP
committed
6d24de9
FIX: ASO reads split_scan_extension from scans, not through the CBCT pipeline
Jules-GP
committed
cd8bbed
FIX: AREG_IOS asked the supervisor for 'ALI', renamed to ALI_IOS by the split
Jules-GP
committed
88753b2
ADD: describe.py collects require() tool names, not only sup.run()
Jules-GP
committed
638f928
FIX: split AREG's stranded test file into the three tools it became
Jules-GP
committed
7ade429
FIX: move ALI's stranded IOS tests into ALI_IOS and update the CBCT suite to the split API
Jules-GP
committed
fa7ae70
FIX: CI discovers tools inside grouping folders and runs on Node 24
Jules-GP
committed
4bbdef2
FIX: stub the engine import probe so Crown_Seg's tests do not depend on the extra
Jules-GP
committed
d64ab72
CLEAN: drop NOTE prefixes, keeping what they warned about
Jules-GP
committed
0b02fa1
FIX: refuse a fully-automated CBCT run with no segmentation weights named
Jules-GP
committed
444bac9

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Split AREG into three tools, fix what the splits left stranded, and repair CI - #21

Split AREG into three tools, fix what the splits left stranded, and repair CI#21
Jules-GP merged 19 commits into
mainfrom
feat/areg-ioscbct

Commits on Aug 18, 2026

ADD: rule that a sup.run() call must live in the tool's own src/

ADD: split AREG into AREG_CBCT and AREG_IOS with a shared dependency-free common package

FIX: split a concatenated jaw and timepoint token so patient keys and jaws resolve

Commits on Aug 19, 2026

FIX: restore ALI_IOS's missing import, torch helpers, monai dependency and orphaned semaphore

ADD: AREG_IOSCBCT registering an intraoral scan onto a CBCT through the supervisor

ADD: pyflakes to the repository checks to catch undefined names

CLEAN: replace em-dashes with plain dashes across markdown and Python sources

FIX: point AREG error messages at each split tool's own data endpoint

UPDATE: Crown_Seg install hint, now that pytorch3d ships as a prebuilt wheel

CLEAN: drop four imports no code in these modules uses

FIX: ASO reads split_scan_extension from scans, not through the CBCT pipeline

FIX: AREG_IOS asked the supervisor for 'ALI', renamed to ALI_IOS by the split

ADD: describe.py collects require() tool names, not only sup.run()

FIX: split AREG's stranded test file into the three tools it became

FIX: move ALI's stranded IOS tests into ALI_IOS and update the CBCT suite to the split API

FIX: CI discovers tools inside grouping folders and runs on Node 24

FIX: stub the engine import probe so Crown_Seg's tests do not depend on the extra

CLEAN: drop NOTE prefixes, keeping what they warned about

FIX: refuse a fully-automated CBCT run with no segmentation weights named