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chore(deps): bump r-lib/actions/setup-r-dependencies from 2.11.4 to 2.13.0 - #87

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chore(deps): bump r-lib/actions/setup-r-dependencies from 2.11.4 to 2.13.0#87
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@dependabot dependabot Bot commented on behalf of github Sep 3, 2026

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Bumps r-lib/actions/setup-r-dependencies from 2.11.4 to 2.13.0.

Changelog

Sourced from r-lib/actions/setup-r-dependencies's changelog.

v2.13.0 (2026-08028)

  • [setup-r] now retries r-hub.io HTTP failures (#1088, @​nbenn).

  • [setup-r] now sets the correct RTOOLS environment variables on aarch64 Windows (@​vjymisal0, #1104).

  • [setup-r] keep repositories if they are set by the build. E.g. aarch64 Windows builds now set them (@​jeroen, #1101).

  • [setup-r] now retries transient failures when resolving the R version from api.r-hub.io, rather than failing the job on the first timeout or server error (@​nbenn, #1086).

  • [setup-r-dependencies] now switches back to classic sudo, if available, on Linux. This fixes installing pak on Ubuntu 26.04 runners (@​jeroen, #1096).

v2.12.1 (2026-06-23)

  • [setup-r] now avoids a warning about an url.parse() deprecation (#1074).

  • [setup-r-dependencies] now uses quarto-dev/quarto-actions v2.2.0 (@​jdblischak, #1076).

  • Examples: test-coverage.yaml now uses codecov/codecov-action v7 (@​shikokuchuo, #1081).

  • New example claude-investigate.yaml workflow (@​DavisVaughan, #1084).

v2.12.0 (2026-04-29)

  • All node.js actions use node 24 now. Relatedly, all example workflows use recent versions of actions that use node 24.

  • [setup-r] now uses use-public-rspm: true by default on Linux and Windows. macOS binaries require further opt-in with use-public-rspm: always.

  • It is now possible to require actions to be pinned to a full-length commit SHA in repositories using r-lib/actions (#1070).

  • [setup-pandoc][setup-r-dependencies] now default to Pandoc version 3.8.3.

  • [setup-r-dependencies] now includes the R architecture in the cache key, so caches for macos-15 (Apple Silicon) and macos-15-intel (Rosetta/x86_64) no longer collide (#1035).

... (truncated)

Commits
  • 465b7d8 NEWS for 2.13.0 (#1105)
  • d06a540 [setup-r] retry transient r-hub.io request failures (#1088)
  • ed9aa85 fix(setup-r): export correct RTOOLS HOME env vars on Windows ARM64 and x64 (#...
  • c86f32c setup-r-dependencies: set JAVA_HOME on Windows runners from Java 21 env vars ...
  • 2a66450 setup-r-dependencies: switch back to classic sudo on runners with sudo-rs (#1...
  • 5cc1f0d Fix minor typo (#1098)
  • 33d09fb fix: Remove stray ::group:: (#1103)
  • aae88a2 Special-case CRAN mirror for Windows ARM64 (#1101)
  • b7484da [setup-r] Support installing RTools without installing R (#1093)
  • d3c5be5 Update NEWS for v1.12.1 (#1087)
  • Additional commits viewable in compare view

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Devin Review

Bumps [r-lib/actions/setup-r-dependencies](https://github.com/r-lib/actions) from 2.11.4 to 2.13.0.
- [Release notes](https://github.com/r-lib/actions/releases)
- [Changelog](https://github.com/r-lib/actions/blob/v2-branch/NEWS.md)
- [Commits](r-lib/actions@6f6e5bc...465b7d8)

---
updated-dependencies:
- dependency-name: r-lib/actions/setup-r-dependencies
  dependency-version: 2.13.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

@devin-ai-integration devin-ai-integration Bot left a comment

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✅ Devin Review: No Issues Found

Devin Review analyzed this PR and found no bugs or issues to report.

Devin Review

@cwl-noema-review cwl-noema-review Bot left a comment

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Noema LLM review

Routine Dependabot-style SHA bump of r-lib/actions/setup-r-dependencies from 6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 to 465b7d8e732ca3921382b1674c59bada9cbf3399 across all three workflow files. The diff changes only the uses: SHA pins; all inputs, needs, extra-packages, and surrounding workflow logic remain unchanged. Both SHAs fall in the stable v2 release line of the action, and the preserved inputs occupy the same interface contract, so no behavioral regression is expected.

Reviewed changed lines

  • .github/workflows/R-CMD-check.yaml:45 (RIGHT): SHA-only pin rotation on the uses line; with-block inputs extra-packages and needs are preserved.
  • .github/workflows/test-fast.yaml:23 (RIGHT): Identical SHA-only pin update with unchanged extra-packages and needs inputs.
  • .github/workflows/test-suite.yaml:39 (RIGHT): SHA-only pin rotation; surrounding workflow behavior and inputs are unaffected.

Adversarial validation

  • .github/workflows/R-CMD-check.yaml:45 (RIGHT) falsified: The SHA bump changes how setup-r-dependencies consumes extra-packages: any::rcmdcheck, any::testthat or needs: check, causing failed or modified dependency resolution. — Line 45 is the only changed line. The with-block on lines 46-48 still specifies any::rcmdcheck, any::testthat, and needs: check. Both SHAs are v2-line commits with a stable input contract.
  • .github/workflows/test-fast.yaml:23 (RIGHT) falsified: The action upgrade introduces a workflow-specific regression in test-fast.yaml, for example because it uses any::testthat without rcmdcheck. — Line 23 has the identical new SHA. The subsequent with-block still passes extra-packages: any::testthat and needs: check, unchanged from before the bump. No interface difference is evident.
  • Residual risk: No concrete regression scenario was falsified. Residual risk is limited to upstream repository changes between the two v2 commits, but the action's public input contract is stable across these releases.

Findings

  • No blocking findings.
  • Result: APPROVE
  • Head SHA: 88d85390961b3671453fc37a710e54ad4961dd51
  • Reviewer credential: noema-review-github-app-refresh
  • Actor: cwl-noema-review[bot]

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