Cai Lab at University of Michigan

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1. nTracer nTracer Public

   Rolling release code for the nTracer ImageJ/Fiji plugin, as published in: Roossien DH, et. al, Bioinformatics 2019.

   Java 5

2. MiCV MiCV Public

   MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.

   CSS 7

3. nGauge nGauge Public

   A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.

   Jupyter Notebook 8 1

4. TraceMontage TraceMontage Public

   A ImageJ/Fiji plugin for the merging of multiple neuron traces between two images, as published in: Dizaji SA, Walker L, and Cai D, Journal of Neuroscience Methods 2019.

   Java 3

5. public_tracing_datasets public_tracing_datasets Public

   Publicly-released neuron tracing datasets from Cai Lab papers.

   3

6. SISF_CDN SISF_CDN Public

   A tool for remote access of SISF Files

   C++ 4