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Csdms attempted fixes #49

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Csdms attempted fixes #49

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6278d85
Remove specific version pinning for pyopenssl in Dockerfile to allow …
devincowan Jun 3, 2025
68a62e5
Remove specific version pinning for pymt_hydrotrend and pymt_sedflux …
devincowan Jun 3, 2025
9ed48e6
Update Dockerfile to clear conda pins and install dependencies from e…
devincowan Jun 3, 2025
ac82df1
Set working directory to /opt in Dockerfile
devincowan Jun 3, 2025
0d0e767
Remove pyopenssl upgrade to resolve nbfetch loading issue
devincowan Jun 3, 2025
37b3190
Set working directory to root after updating conda environment
devincowan Jun 3, 2025
c3e9c1c
Add CONDA_PKG_DIRS environment variable to Dockerfile
devincowan Jun 3, 2025
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15 changes: 9 additions & 6 deletions singleuser/csdms-tools/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,18 @@ FROM cuahsi/singleuser-base:$BASE_VERSION
USER $NB_UID

ENV XDG_CACHE_HOME /home/$NB_USER/.cache/
ENV CONDA_PKG_DIRS=$HOME/.conda/pkgs

WORKDIR /opt
RUN > /opt/conda/conda-meta/pinned # clear conda pins
COPY --chown=$NB_UID:$NB_UID environment.yaml /tmp/environment.yaml
RUN mamba env update -n base --file /tmp/environment.yaml \
&& mamba clean -afy
WORKDIR /

# downgrade pyopenssl to 23.0.0
RUN mamba install -y \
--channel conda-forge \
pyopenssl=23.0.0 \
pyopenssl \
&& mamba clean --all -f -y

# pymt
Expand All @@ -28,10 +35,6 @@ pymt_gipl==0.1.1 \
pymt_rafem==0.1.4 \
&& mamba clean --all -f -y

# upgrade pyopenssl to fix an issue that is preventing
# nbfetch from loading correctly.
RUN mamba upgrade pyopenssl -y


# data component
RUN mamba install -y \
Expand Down
5 changes: 5 additions & 0 deletions singleuser/csdms-tools/environment.yaml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
name: base
channels:
- conda-forge
dependencies:
- python==3.9.16