CCBR · kelly-sovacool · Jun 11, 2026 · Jun 11, 2026 · Jun 11, 2026
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,7 @@
 ## Tools development version
 
+- minor documentation improvements. (#197, #198, @kelly-sovacool)
+
 ## Tools 0.7.0
 
 - New pre-commit hook: `ccbr-hooks sync-nextflow-version`. Syncs `manifest.version` in `nextflow.config` from the repo `VERSION` file. (#193, @kelly-sovacool, @copilot)

diff --git a/docs/.gitignore b/docs/.gitignore
@@ -6,3 +6,5 @@
 /_freeze/
 /site_libs/
 /_inv/
+
+**/*.quarto_ipynb
diff --git a/docs/_quarto.yml b/docs/_quarto.yml
@@ -83,6 +83,7 @@ quartodoc:
       contents:
         - hooks
         - hooks.detect_absolute_paths
+        - hooks.sync_nextflow_version
     - title: Legacy tools
       contents:
         - GSEA.deg2gs

diff --git a/docs/render_site.sh b/docs/render_site.sh
@@ -1,4 +1,3 @@
 ccbr_tools quarto-add fnl
-python -m quartodoc build --verbose
-python -m quartodoc interlinks
+python -m quartodoc build --verbose && python -m quartodoc interlinks
 quarto render
diff --git a/src/ccbr_tools/hooks/sync_nextflow_version.py b/src/ccbr_tools/hooks/sync_nextflow_version.py
@@ -1,6 +1,8 @@
 """
 Synchronize `manifest.version` in `nextflow.config` with the repo `VERSION` file.
 
+Whenever the `VERSION` file is updated, the `manifest.version` entry in `nextflow.config` will be updated to match it.
+
 ## Usage with pre-commit
 
 Add this to your `.pre-commit-config.yaml` file: