Transcriptome polish - #649
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…initial region filtering
…t I forgot to add the file
…iltering, more stringent fusion isoform detection
…splice junction detection (sj still buggy)
… full-length reads as final score, also output non-full-length-read-support
…l supporting reads
…rod, and bed_to_gtf
…t ends. NOTE: this currently breaks quantify
…ht restructuring of how we handle gtf annot)
Adding FlairBed
…y console script installs
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multiple comments from colette and markd co-development