v1.3.0

What's Changed

• [BI-2581] Remove: "Template version placeholder" by @davedrp in #434
• BI-2618 - Error with npx sort-package-json by @mlm483 in #440
• [BI-2009] - Dynamic Concatenation of Entity + ObsUnitID (Exp UI) by @HMS17 in #436
• BI-2218 Optimize sandbox landing page for mobile device by @davedrp in #442
• [BI-2218]fixed logic bug. by @davedrp in #443
• [BI-2628] Replace Static ObsUnitID column to Dynamic Sub-entity ObsUnitID column in APpend Workflow by @dmeidlin in #445
• [BI-2630] - Improve Create Sub-Entity Pop-Up by @HMS17 in #447
• [BI-2628-2] Replace Static ObsUnitID column to Dynamic Sub-entity ObsUnitID column in APpend Workflow by @dmeidlin in #448
• BI-2539 - Add GitHub as Alternative OAuth Provider by @mlm483 in #429
• merge release/1.1.1 into develop by @mlm483 in #451
• [BI-2193] - Improve/Correct Sub-Entity Tabular View by @HMS17 in #450
• [BI-2755] - improve default sub-unit sort by @HMS17 in #452
• BI-2531 / BI-2753 / BI-2733 by @nickpalladino in #453
• BI-2715 - Delete exp warning observation count is wrong by @nickpalladino in #455
• [BI-2716] Exp preview observation variable count is wrong by @davedrp in #456
• [BI-2758] - Autocomplete by @HMS17 in #454
• BI- 2615 Incorrect sorting Exp Rep #, Exp Block #, Row and Col by @davedrp in #457
• [BI-2744] DeltaBreed:Create exp, create obs level by @HMS17 in #458
• [BI-2778] Deprecate additionalinfo usage for level and use obs unit lvl by @HMS17 in #459
• [BI-2778] Deprecate additionalinfo usage for level and use obs unit level by @HMS17 in #460
• [BI-2760] Update Affiliations in UI Footers by @HMS17 in #462
• [BI-2803] Fix broken preview table on Sub Entity Appends and Observation Variable Stat by @jloux-brapi in #461
• BI-2805 - Fix autocomplete to work with new BrAPI levelNames by @nickpalladino in #463
• BI-2836 - Unable to retrieve program dataset names error message by @nickpalladino in #464
• BI-2860 - Experimental Collaborators able to create sub entity datasets by @humsika in #469
• v1.3 Release by @nickpalladino in #470

New Contributors

• @jloux-brapi made their first contribution in #461
• @humsika made their first contribution in #469

Full Changelog: v1.2.0...v1.3.0

v1.2.0

What's Changed

• merging bug/BI-2618 into develop by @mlm483 in #439
• BI-2597 Sorting Exp Unit ID incorrectly by @davedrp in #441
• BI-2639 - Improve duplicate message accuracy by @nickpalladino in #444
• BI-2691 - Cannot add Xuemei to Alfalfa Prosser program by @nickpalladino in #446
• Merge release/1.1.1 into main by @mlm483 in #449

Full Changelog: v1.1.0...v1.2.0

v1.1.0

Features

• [BI-2449] - Correct Exp Summary Stats @HMS17 (#426)
• [BI-2431] - Sample submission delete BrAPI server changes @nickpalladino (#425)
• [BI-2380] - Add Delete Option to Samples View @nickpalladino (#425)
• [BI-2379] - Create Delete Endpoint for Deltabreed Sample Controller @nickpalladino (#425)
• [BI-2377] - Add Delete Option to Experiments View @davedrp (#423)
• [BI-2374] - Create Endpoints on BJTS for Processing Batch Delete Operations @dmeidlin (#420)
• [BI-2373] - Add Delete Option to Germplasm Lists View @dmeidlin (#420)
• [BI-2372] - Create Deltabreed List Controller @dmeidlin (#420)
• [BI-2224] - Improve reporting of summary statistics for append-overwrite experiment workflow @davedrp (#403)
• [BI-2140] - Accessibility: Home Page @davedrp (#430)
• [BI-2129] - Accessibility: Germplasm Table Fixes @HMS17 (#401)
• [BI-2124] - Geological sort - germplasm lists @davedrp (#435, #419)

Bugfixes

• [BI-2589] - Germplasm List and Germplasm List Detail Pages resubmitting Default page & page size. @davedrp (#433)
• [BI-2555] - Fix Germplasm By List Default Sorting @mlm483 (#431)
• [BI-2496] - When Deleting an Experiment: "Success" message appears even if delete fails. @davedrp (#427)
• [BI-2343] - GID and List Entry Number filtering not informative @HMS17 (#418)
• [BI-2342] - Experimental filtering is case specific @davedrp (#415)

v1.0.0

Features

• [BI-2304] - Support Duplicate Germplasm in Lists Referencing Existing Germplasm @mlm483 (#399) (#406)
• [BI-2295] - Allow Experimental Collaborators To View Collaborators @HMS17 (#397)
• [BI-2259] - Disable Sub-entity Dataset option in Manage experiments menu @davedrp (#390)
• [BI-2255] - Experimental Collaborator Micronaut Changes @davedrp (#402)
• [BI-2226] - Experiment and Observations Template: Remove 2 sub-obs columns @dmeidlin (#395)
• [BI-2154] - Adjust Read Only permissions @davedrp (#392)
• [BI-2152] - Experimental Collaborator Front-end Permissions @davedrp (#396)
• [BI-2121] - Workflows UI Select Box @nickpalladino (#378)
• [BI-2106] - Accessibility: Web Version @davedrp (#385)
• [BI-2105] - Accessibility: Header and Navigation @davedrp (#380)
• [BI-2103] - Accessibility: Links on Index and Not Authorized Pages @davedrp (#381)
• [BI-2102] - Accessibility: Make Color Contrast Meet AA Standard @davedrp (#384)
• [BI-2044] - Can't archive an observation variable that is in use @nickpalladino (#391)
• [BI-2005] - Expand Exp Template @nickpalladino (#355)
• [BI-1693] - Add Collaborator To And Remove From Experiment (UI) @dmeidlin (#393)
• [BI-1692] - Change role names @HMS17 (#388)

Bugfixes

• [BI-2355] - Non-informative error message: regression @HMS17 (#412)
• [BI-2334] - Wonky Colors - Exp preview @dmeidlin (#407)
• [BI-2328] - Experimental observation file import removes periods from column headers @davedrp (#411)
• [BI-2302] - Fix wonky colors @HMS17 (#398)
• [BI-2167] - Lat and long values are getting swapped in the exp download file @nickpalladino (#386)
• [BI-2126] - Env year missing from dataset view @davedrp (#389)
• [BI-2123] - Jobs table sizing is wonky & hiding the "details" option @dmeidlin (#405)
• [BI-1975] - "Unknown" Breeding Method not recognized @nickpalladino (#387)
• [BI-1933] - Erroneous message: No germplasm are currently defined for this program @mlm483 (#404) (#408)

v0.9.1

Features

• [BI-2108] - Accessibility: Import Data - Empty Heading @davedrp (#377)
• [BI-2008] - Preview summary stats refinement @dmeidlin (#359)
• [BI-1969] - Geologic sort: Germplasm, Experiments, and Sample Submission @davedrp (#374)
• [BI-1868] - Ontology: Display full name in table and details pane @HMS17 (#358)

v0.9.0

Features

• [BI-1963] - Hide Data Mapping Tab @nickpalladino (#344)
• [BI-1958] - Hide images and attributes from germplasm details @nickpalladino (#345)
• [BI-1922] - Add ability to download all germplasm in a program @davedrp (#350)
• [BI-1921] - Support Field Book Study Import from DeltaBreed @timparsons (#346)
• [BI-1915] - Export Ontology File @davedrp (#349)
• [BI-1914] - Improve exp dataset sort @davedrp (#339)
• [BI-1910] - Allow Breeder to Upload a Genotype Sample File @timparsons (#343)
• [BI-1867] - Ontology: Increase name length to 16 characters @HMS17 (#354)
• [BI-1847] - Experiment import template formatting improvements @mlm483 (#333)
• [BI-1265] - 4 Overwrite entity dataset @nickpalladino (#351)
• [BI-2017] - Change Germplasm Upload to unify with sample submission @davedrp (#372)
• [BI-1680] - Somaclone Breeding Method @mlm483 (#373)

Bugfixes

• [BI-2060] - Conditionally render the genotypic data import tab when running in production @dmeidlin (#362)
• [BI-2059] - Field Book not displaying nominal categories from DeltaBreed (BrAPI pull) @nickpalladino (#371)
• [BI-2054] - Show proceed dialog on overwrite regardless of reason text presence @nickpalladino (#363)
• [BI-2042] - Jobs loading banner and loading wheel on button not displayed when overwriting experiment data @nickpalladino (#363)
• [BI-2029] - Experiment Preview and Visual Progress Indicators Broken in v0.9 @davedrp (#357)
• [BI-1935] - Error remains displayed @nickpalladino (#347)
• [BI-1926] - Environment count incorrect @davedrp (#337)
• [BI-1912] - Wonky spacing on exp dataset summary @nickpalladino (#353)
• [BI-1852] - Duplicate breeding method can be created @davedrp (#334)
• [BI-1761] - Error message with the backend code. @dmeidlin (#352)

Hotfixes

• [BI-2036] Update guest accounts listed in Sandbox left sidebar nav menu @dmeidlin (#356)
• [BI-2053-fix] - Fixed Trait Form Scale Units Handling @mlm483 (#369)

v0.8.1

Detailed Release Information

Features

• [BI-1900] - Exp error message improvement: unrecognized column header @davedrp (#328)
• [BI-1872] - Generate Access Token for using BrAPI with DeltaBreed @timparsons (#327)
• [BI-1845] - Update any calls to fetch gemplasm lists via GET /lists to explicitly pass the list type as germplasm @mlm483 (#324)
• [BI-1817] - [bi-web] - BI-1645 - View exp: Obs dataset tab, details, and summary stats @davedrp (#321)
• [BI-1805] - Confusing message in breeding methods @mlm483 (#317, #336)
• [BI-1720] - Export Multiple Environment Datasets as Zip @mlm483 (#320)
• [BI-1647] - View Experiments: Observation Dataset Table @davedrp (#322)
• [BI-1618] - Import File Selection Behavior @davedrp (#319)

Bugfixes

• [BI-1927] - entry numbers are not rendering 0.8.1 @mlm483 (#338, #342)
• [BI-1923] - Treatment factor missing from experimental ui @davedrp (#332)
• [BI-1918] - Experiment: No datasets exist @davedrp (#330)
• [BI-1911] - Environment Year Missing from Exp table @dmeidlin (#331) @davedrp (#341)
• [BI-1876] - Generic Error on Successful Upload of Large Germplasm File @nickpalladino (#329)
• [BI-1821] - Experiment import/download buttons wrong color @nickpalladino (#325)
• [BI-1799] - Show all button is not working when extensive amount of data needs to populate the table. @mlm483 (#323, #335)

v0.8.0

Detailed Release Information

Features

• [BI-1764] - DeltaBreed logo @timparsons (#312)
• [BI-1717] - [bi-web] - BI-1644 - View experiment: Details, Summary Stats, Actions @davedrp (#316)
• [BI-1707] - Update "Ontology Sharing" tab to "Configuration" @mlm483 (#308)
• [BI-1690] - Collapse Left Hand Menu @timparsons (#312)
• [BI-1653] - Update Experiment Preview to show observations @nickpalladino (#279)
• [BI-1651] - Allow programs to choose/create breeding methods @timparsons (#292)
• [BI-1650] - Store and fetch genotype data @timparsons (#282)
• [BI-1644] - View experiment: Details, Summary Stats, Actions @davedrp (#316)
• [BI-1629] - Add filtering to OntologyTable @dmeidlin (#304)
• [BI-1617] - Refactor Ontology table to use Buefy @dmeidlin (#304, #314)
• [BI-1616] - Add Filtering to Germplasm Lists Table @nickpalladino (#293)
• [BI-1615] - Add termType to Trait DB Table @HMS17 (#285)
• [BI-1614] - Add Term Type to Ontology Term display and form creation/modification @HMS17 (#284)
• [BI-1613] - Add Term Type to Ontology Term Import @HMS17 (#287)
• [BI-1606] - Allow germplasm records to be in multiple lists @dmeidlin (#298)
• [BI-1583] - Error Message 1: Missing Data Worksheet @davedrp (#307)
• [BI-1570] - Improve error reporting - Text to Table @HMS17 (#275)
• [BI-1569] - Update within program left hand menu @nickpalladino (#295)
• [BI-1548] - Experiments: User and Creation Date Refinement @nickpalladino (#296)
• [BI-1498] - Add Subscribed Program name to subscribe ontology success message @nickpalladino (#297)
• [BI-1477] - Improve All Experiments Table @HMS17 (#283, #299)
• [BI-1473] - Allow user to append existing germplasm with optional details @HMS17 (#265)
• [BI-1465] - 6.1 Observation Dataset Export File @dmeidlin (#318)
• [BI-1238] - 6.0 Download Experimental Data UI @mlm483 (#309, #315)
• [BI-1198] - 5.0 All Experiments Table @HMS17 (#254)
• [BI-1195] - 4.3 Exp Preview: Append Experiment with Observations @timparsons (#302)
• [BI-1194] - 4.2 Upload with timestamps @HMS17 (#281)
• [BI-1183] - 3.1 Import Validations: Ontology-specific observation criteria @nickpalladino (#272)
• [BI-1147] - 2.0 Experimental Data Preview Universal Elements @dmeidlin (#273)
• [BI-1129] - View Germplasm List @dmeidlin (#276, #294)

Bugfixes

• [BI-1779] - Import germplasm with unspecified breeding method @timparsons (#313)
• [BI-1741] - Genotype Import @timparsons (#305)
• [BI-1721] - Show All - Breeding Methods table @timparsons (#303)
• [BI-1620] - Program Selection page doesn't show all programs if more than 50 exist @davedrp (#301)

v0.7.0

Detailed Release Information

Features

• [BI-1528] - New Breeding Method - Creation of tetraploids by applied pressure shock @HMS17 (#250)
• [BI-1527] - New Breeding Method - Creation of triploids by applied pressure or temperature shock @HMS17 (#250)
• [BI-1499] - Improve Presentation of Buttons @HMS17 (#245)
• [BI-1494] - Improve pedigree view display @HMS17 (#256)
• [BI-1494] - Improve pedigree view display @ctucker3 (#248)
• [BI-1494] - Improve pedigree view display @timparsons (#238)
• [BI-1491] - New Breeding Method - Polyembryonic seed selection @HMS17 (#250)
• [BI-1478] - Add Pedigree to All Germplasm Table @HMS17 (#271)
• [BI-1414] - Improve table loading message @HMS17 (#205)
• [BI-1283] - Improve Left Hand Menu @HMS17 (#207)
• [BI-1230] - Truly unknown germplasm @HMS17 (#260)
• [BI-1224] - 4.1.1 Show list creator in Germplasm lists table @HMS17 (#244)
• [BI-1202] - 5.2 Sort Germplasm in All Germplasm table @ctucker3 (#197)
• [BI-1199] - 4.2 Choose file format for germplasm export @HMS17 (#243)
• [BI-1191] - 5.3 Filter Germplasm on All Germplasm Table @ctucker3 (#242)
• [BI-1189] - 4.0 Exp Preview & Commit: Create Exp Independent Variables @davedrp (#255)
• [BI-1189] - 4.0 Exp Preview & Commit: Create Exp Independent Variables @davedrp (#252)
• [BI-1146] - 3.0 Upload & Validate Independent Variables for New Experiment @davedrp (#249)
• [BI-1146] - 3.0 Upload & Validate Independent Variables for New Experiment @davedrp (#224)
• [BI-1145] - 1.0 Experimental File Template @ctucker3 (#172)
  ​

Bugfixes

• [BI-1634] - Germplasm filtering and sorting fails for pages beyond the first @davedrp (#277)
• [BI-1589] - All Germplasm table pagination doesn't work with page-1 or show-all @HMS17 (#270)
• [BI-1585] - TAF - Set proper id for "Choose ontology to subscribe to:" drop-down @timparsons (#263)
• [BI-1579] - Breedbase progeny endpoint not BrAPI-compliant @HMS17 (#260)
• [BI-1557] - Sorting Failures in Germplasm Table @dmeidlin (#264)
• [BI-1553] - Pedigree View on Firefox @timparsons (#262)
• [BI-1506] - "Created Date" field in the All Germplasm table has the wrong date format. @HMS17 (#261)
• [BI-1506] - "Created Date" field in the All Germplasm table has the wrong date format. @HMS17 (#257)
• [BI-1402] - Ontology show more: categories section is indented @HMS17 (#231)
• [BI-1401] - “Show All” for programs pagination doesn’t work if user is on the last page of pagination @HMS17 (#234)
• [BI-1398] - Ontology preview: Checking trait editability status @HMS17 (#229)

v0.6.0

About the release

v0.6 is the latest release in preparation for the Breeding Insight v1.0 public release. This release continues the development of genealogy management and ontologies, and introduces the new jobs module. This release reflects a smaller work effort than the previous release. Moving forward Breeding Insight plans to continue smaller more frequent software releases.

New features

Germplasm Details

• Hyperlinks to germplasm details from across user interface
• Summary of germplasm details
• Pedigree view: explore pedigree relationships with an interactive interface.

Ontology

• Ability to share an ontology across programs

Jobs

• Monitor data upload status asynchronously via the new jobs module.

Detailed Release Information

Features

• [BI-1459] - Create job status page to view running and completed background jobs @timparsons (#232)
• [BI-1427] - Remove unused Traits Vue Components @HMS17 (#226)
• [BI-1420] - Allow Germplasm to Have Synonyms @ctucker3 (#220)
• [BI-1375] - Make GIDs clickable links @HMS17 (#218)
• [BI-1366] - Subscribe a program to a shared ontology @ctucker3 (#216)
• [BI-1364] - View a shared ontology that a program is subscribed to @dmeidlin (#219)
• [BI-1363] - Share a program's ontology with other programs @ctucker3 (#214)
• [BI-1347] - Germplasm pedigree view @timparsons (#238)
• [BI-1339] - Germplasm Details Page @HMS17 (#217)

Bugfixes

• [BI-1445] - Trait Column value not the same as entered in the the Term creation @HMS17 (#240)
• [BI-1442] - Previous Import Error Banner Does Not Vanish on New Germplasm Import @HMS17 (#228)
• [BI-1441] - Loading Icon Remains on Save Button For Edit Forms @HMS17 (#233)
• [BI-1438] - User redirect after login with redirect user to non-existent page @ctucker3 (#236)
• [BI-1433] - Ontology Import Template Ordinal Example Incorrect Delimeter @ctucker3 (#223)
• [BI-1404] - No loading wheel ontology page @nickpalladino (#206)