CySA

[baj12]

Update the following URL to point to the GitHub repository of
the package you wish to submit to Bioconductor

• Repository: https://github.com/baj12/CySA

[github-actions]

✅ Bioconductor Precheck Passed

Next Step: Please accept the Bioconductor submission policies:

• I understand that by submitting my package to Bioconductor, the package source and all review commentary are visible to the general public.

• I have read the Bioconductor Package Submission instructions. My package is consistent with the Bioconductor Package Guidelines.

• I understand Bioconductor Package Naming Policy and acknowledge Bioconductor may retain use of package name.

• I understand that a minimum requirement for package acceptance is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS. Passing these checks does not result in automatic acceptance. The package will then undergo a formal review and recommendations for acceptance regarding other Bioconductor standards will be addressed.I can test building and checking by Adding Bioconductor R-Universe GitHub Action.

• I understand Bioconductor's AI and Third Party Code policy and will acknowledge accordingly if applicable

• I am committed to the long-term maintenance of my package. This includes monitoring the support site for issues that users may have, subscribing to the bioc-devel mailing list to stay aware of developments in the Bioconductor community, subscribing to the Bioconductor Zulip to participate in any community chat relating to your package,responding promptly to requests for updates from the Core team in response to changes in R or underlying software.

• I understand it is my responsibility to maintain a valid, active maintainer email in the DESCRIPTION of my package. This email should allow emails from noreply@bioconductor.org and BBS-noreply@bioconductor.org to allow automatic notifications from the Bioconductor team concerning my package.

• I am familiar with the Bioconductor code of conduct and agree to abide by it.

• I am familiar with the essential aspects of Bioconductor software management, including:

  • The 'devel' branch for new packages and features.
  • The stable 'release' branch, made available every six months, for bug fixes.

For questions/help about the submission process, including questions about the output of the automatic reports generated by the SPB (Single Package Builder), please use the bioc-devel mailing list or #package-submission channel of our Community Zulip.

To Accept Policies Comment Exactly (all lowercase!):

/accept-policies

[baj12]

/accept-policies

[github-actions]

✅ Bioconductor policies accepted.

Your submission will now proceed to the build and check process.
When build/check is clean a reviewer will be assigned for indepth review.

[github-actions]

✅ Cloned baj12/CySA → BiocStaging/CySA (branch: devel)

✅ Added CySA to registry.

Your package is cloned to the Bioconductor new submission source repository and r-universe for testing.

We have added you as a collaborator at https://github.com/BiocStaging/CySA
You will need to accept the github invitation to push future changes.
Task: Please accept collaborator access now.

If you want to push command line updates, you need to update your remotes:

  git remote add biocstaging git@github.com:BiocStaging/CySA
  git push biocstaging devel

Bioconductor uses devel as its default branch.
If you use a different branch (example: main) map branches when pushing:

  git push biocstaging main:devel

You will receive your build report shortly. Builds may take an hour or two to
register based on github action scheduler.
If you do not receive a build report within 24 hours please ask for assistance.

This is true for every subsequent push to trigger a new build.
You can check if your changes were properly commited to the Bioconductor respository by
checking https://github.com/BiocStaging/CySA

We encourage you to sync and maintain both your personal and Bioconductor GitHub repository
You can mimic R-universe builds on your personal GitHub repository before
pushing to the Bioconductor GitHub repository.
See instructions at Adding Bioconductor R-Universe GitHub Action

Reminders:

• All packages should be free of Errors and Warnings.
• Any Errors or Warnings must be fixed or justified; a reviewer will not be assigned until this is complete.
• Once a reviewer is assigned, justify any remaining Errors, Warnings, or Notes
• Address reviewer comments with a point-by-point response.

[github-actions]

👤 Reviewer @hyu-kim has been assigned.