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1. instadeepai/InstaNovo instadeepai/InstaNovo Public

   De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments

   Python 127 30

2. instadeepai/winnow instadeepai/winnow Public

   Confidence control and FDR estimation for de novo peptide sequencing

   Python 10 2

3. instadeepai/InstaNovo-P instadeepai/InstaNovo-P Public

   InstaNovo-P: A De Novo Peptide Sequencing Model for Phosphoproteomics

   Python 1

4. awesome_de_novo_peptide_sequencing awesome_de_novo_peptide_sequencing Public

   Python

5. hackathon_IndabaX_2025_mlip hackathon_IndabaX_2025_mlip Public

   Data and starter notebook for the Machine Learning Interatomic Potential (MLIP) hackathon

   Jupyter Notebook 5 5

6. hackathon_indabaX_2024 hackathon_indabaX_2024 Public

   Data and starter notebooks for the locust breeding ground prediction hackaton

   Jupyter Notebook 3 4