BioDepot
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BioDepot-workflow-builder
BioDepot-workflow-builder Public💻 GUI for creating bioinformatics workflows from 🐳 Docker containers:
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RNA-seq-lambda
RNA-seq-lambda PublicRapid RNA-seq pipeline using AWS lambda functions for alignment
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TaskPerform_AWSLambda
TaskPerform_AWSLambda PublicComputational tasks performance in parallel using AWS Lambda and example
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GUIdock-X11
GUIdock-X11 PublicForked from kristiyanto/GUIdock
Graphical GUI for Docker (Bioconductor, R, Cytoscape, NetworkBMA)
Repositories
- SpatialProteomics Public
A modular and interactive spatial proteomic image analysis workflow with individual containerized steps, consisting of cell segmentation, unsupervised clustering with optional batch correction, validation of clusters on the image, and cell type clustering results visualization
BioDepot/SpatialProteomics’s past year of commit activity - temporal-scheduler Public
BioDepot/temporal-scheduler’s past year of commit activity - biodepot-catalog Public
Curated catalog of BioDepot Docker modules — schema, tag parser, and index entries.
BioDepot/biodepot-catalog’s past year of commit activity - biodepot_baseimages Public
BioDepot/biodepot_baseimages’s past year of commit activity - scRNA-serverless Public
BioDepot/scRNA-serverless’s past year of commit activity - LongCOVID-RNAseq Public
BioDepot/LongCOVID-RNAseq’s past year of commit activity - BioDepot-workflow-builder Public
💻 GUI for creating bioinformatics workflows from 🐳 Docker containers:
BioDepot/BioDepot-workflow-builder’s past year of commit activity - TrimGalore Public
BioDepot/TrimGalore’s past year of commit activity
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