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pyanglemania

Introduction

A GPU-ready Python/AnnData port of the R/Bioconductor anglemania package: selects genes whose pairwise correlations stay invariant across batches, for use as integration features (in place of, or alongside, highly-variable genes).

Tutorial

See notebooks/tutorial.ipynb for a full walkthrough: simulating multi-batch data, running pp.anglemania, comparing the selected genes against highly_variable_genes, and integrating both gene sets with Harmony.

See CLAUDE.md for architecture details and how this maps onto the original R algorithm.

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