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commit 9faabe455dad0a2744dfefb1adddcb47e64c13bf
Author: Artur-man <artur-man@hotmail.com>
Date: Sun Jul 5 12:14:38 2026 +0200
update website
commit 3326f7272d0356aafe58e9ff3b94486e25eee756
Merge: 48d4065 0afeba5
Author: Artur-man <artur-man@hotmail.com>
Date: Sun Jul 5 12:11:31 2026 +0200
bump version, add NEWS
commit 48d4065eddbf4046314f396e810654241fa04d41
Author: Artur-man <artur-man@hotmail.com>
Date: Sun Jul 5 12:02:49 2026 +0200
add metadata feature transfer for sc integration
commit 5b5e41f312dc937ac2c34a76569dfd0b65713af0
Author: Artur-man <artur-man@hotmail.com>
Date: Sun Jun 21 21:41:17 2026 +0200
new import
commit 97e72331ddb36c2639752ec2d34d1dcfefca436d
Author: Artur-man <artur-man@hotmail.com>
Date: Thu Jun 18 16:43:49 2026 +0200
single cell to spatial feature transfer
* initial implementation of image free alignment * update importDBITSeq to load only RNA if needed * add DBITseq example to docs * update registration tutorial * fixes for CI * update NEWS * update pyramid image import
* update formAssay interface and add geoJSON example * fix issues, update docs * some updates * final updates
* add r-universe testing * Add harmony to DESCRIPTION * fix subsetting for fixing for conversion tests * small fixes * fix test bugs * update conversion tests * add more metadata tests * assay metadata subset fix * add old gha to legacy
* update spatial interface * more spatial int. fixes * more fixes to spatial * fix spatial arguments across the package
* update quality control for alignment * separate some functions to metrics.cpp * small modifs to metrics * use intersection and bhattacharyya measures for accuracy * compilable matte mi code * implement matte map for shiny app * implement Alignment stats interface * replace unordered_map with map * update manual alignment metrics * more updates * clean source, and update no-image alignment * change interface of some functions * rmarkdown doc check * add optional header * initial accuracy for fine alignment imp. * checking non-rigid fine accuracy errors * fix fine non-rigid bug in remasking points again * fix mask alignment bug * additional fixes to fine/coarse alignment accuracy * initial mapping of mask for sitk * get accuracy for SimpleITK fine alignment * optimization updates * fix aligner issue * add seed to simpleitk alignment * update NEWS, remove surplus code * return degenerate info * dont let simpleitk used in non-rigid only mode * update degenerate reporting * some corrections based on codex review * drop float operations from matte mi calculation * remove surplus declaration * some performance updates * some updates from claude review * more updates from claude * testing * final updates
* changes in README * update data_matrix to ANY in vrAssay * import methods from VoltronStore * update doc * vrstore branch * rmv branch dep * rmv commented code * final doc fixes
Artur-man
marked this pull request as ready for review
August 21, 2026 12:55
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