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update 2.0.6#214

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aslgraefe merged 9 commits into
mainfrom
develop
Mar 29, 2026
Merged

update 2.0.6#214
aslgraefe merged 9 commits into
mainfrom
develop

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@aslgraefe

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aslgraefe and others added 9 commits December 12, 2025 18:57
* rmv ds_store

* updated eval cohort ppkts

* fixed camelCase in write ppkts

* issue 205, imrpove ppkts export pipeline, validation, fixed bug

* clean up code

* clean up

* updated rarelink figure in docs

* added variantValidator for manual hgvs curation

* added phenopacket adapters to docs

* updated index figure subheading

* added ontology_routing adapter

* test for adapter

* updated phenopackets export adn validation with new functions and cli overview

* added chaching

* updated toml to 2.0.6 and clean up

* updated codes according to rd-cdmv2.0.3 (specifically update of sex of birth to loinc_76689_9 in all files) and version updates

* improved warnings output for pptks pipeline

* removed rd-cdm in this version as it was unused

* improved caching ppkts for label fetching util

* grouped linkml validate data function

* fixed updaet in kafka docker versioning to tofhir pipeline

* improved packaging and readme

* updated phenopackets tests

* updated versions according to rd-cdm 2.0.3

* improved installation docs with updates

* improved pytest

* added changelog for v2.0.6

* updated eval cohort
Implement insert_medical_procedure

ap
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
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@aslgraefe
aslgraefe merged commit c29bead into main Mar 29, 2026
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