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1. BDB-Genomics/AlphaGenomeR BDB-Genomics/AlphaGenomeR Public

   R interface to Google DeepMind AlphaGenome API. Bridging gRPC-based multimodal genomic predictions (RNA-seq, ATAC, Splicing, 3D Genome) into R-native workflows.

   R

2. BDB-Genomics/bdb-cutandrun BDB-Genomics/bdb-cutandrun Public

   A modular, production-ready Snakemake pipeline for CUT&RUN epigenomic analysis — featuring E. coli spike-in normalization, SEACR peak calling, fragment size analysis, and comprehensive QC reporting…

   Python

3. BDB-Genomics/bdb-atacseq BDB-Genomics/bdb-atacseq Public

   A production-grade, modular Snakemake framework for reproducible ATAC-seq analysis, featuring upfront configuration validation and robust QC gating.

   Python 2

4. AtlasMindAI/bigi AtlasMindAI/bigi Public

   We always wonder what breaks I CHANGE this in the CODEBASE. bigi answer it.

   HTML 5 2

5. BDB-Genomics/bdb-rnaseq BDB-Genomics/bdb-rnaseq Public

   Production-grade, modular Snakemake pipeline for RNA-seq analysis. Includes QC (FastQC, fastp), alignment (STAR), quantification (featureCounts), post-alignment QC (RSeQC, Preseq, Picard), DESeq2 …

   Python 2

6. BDB-Genomics/EvoR BDB-Genomics/EvoR Public

   R interface to Evo 2 via NVIDIA BioNeMo. Enabling zero-shot variant effect prediction and generative genomics in R-native workflows.

   R