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sync
dev
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main
- #55
#55
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May 21, 2026
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#55
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merged 60 commits into
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Commits on May 15, 2026
docs(dietcheck): added missing Updated column in example file
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Commits on May 16, 2026
docs(SETAS dietcheck): update URL for pkgdown
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chore(SETAS dietcheck): updated pkgdown badge to readme
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Merge pull request #54 from Atlantis-Ecosystem-Model/chore/i52-setas-example-files
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docs(pkgdown update): add bootstrap 5 + authors
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docs(pkgdown update): remove cran install instructions and update with github install + contact info
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docs(pkgdown updates) : badges start and end for better display on website
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Merge pull request #56 from Atlantis-Ecosystem-Model/docs/i47-pkgdwon-update
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fix(load_dietcheck examples): can not run some examples from dev version of model output.. removed
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chore(load_dietcheck example): remove toml from build
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docs(load_dietcheck examples): update docs without problematic examples
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Merge pull request #59 from Atlantis-Ecosystem-Model/fix/i57-load-dietcheck-fix
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fix(Description dependencies): native pipe requires R 4.1
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refactor(description dependencies): commented text referencing unused package
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chore(description dependencies): fix typo to correctly exclude toml from buildignore
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Merge pull request #61 from Atlantis-Ecosystem-Model/fix/i58-Description-dependencies
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Commits on May 18, 2026
feature(fishbase removal): moved files from package to data-raw for potential use later
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docs(fishbase removal): deletion of Rd files
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docs(fishbase removal): remove fishbase data doc from the global data documentation file
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docs(fishbase removal): make magrittr an internal function
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docs(fishbase removal): remove functions from pkgdown and namespace
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docs(fishbase removal): add magrittr to vignettes since it is no longer exported with package
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tests(fishbase removal): unit test no longer needed
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Merge pull request #63 from Atlantis-Ecosystem-Model/feature/i5-fishbase-removal
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docs(remove bec_dev): remove all function examples and associated rds that reference bec-dev model output
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feature(remove bec_dev): remove plot function and rd
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chore(remove bec_dev): remove deleted function from pkgdown
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chore(remove bec_dev): update namespace base on deleted function
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tests(remove bec_dev): removed unit tests based on bec_dev functions/ dev model setas output
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tests(remove bec_dev): removed unit test focussed on visual plots
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docs(remove bec_dev): removes all references in rmds using sample setas development model
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feature(remove bec_dev): remove ALL example dev model setas output
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Merge pull request #65 from Atlantis-Ecosystem-Model/feature/i60-remove-bec-dev
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tests(unit-test fixes): included a tolerance of 1e-3 for equality tests of real numbers in `dietcheck`
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Commits on May 19, 2026
docs(remove cran): remove cran badge and installation instructions since no longer on CRAN
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tests(remove CRAN): prevent Cran related content in testing
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docs(remove cran): redundant content removed
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Merge pull request #68 from Atlantis-Ecosystem-Model/docs/i67-remove-cran-refs
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docs(remove authors): removed authors of individual functions and vignettes
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docs(remove authors): remove authors from specific functions
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Merge pull request #69 from Atlantis-Ecosystem-Model/docs/i62-author-remove
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Merge pull request #70 from Atlantis-Ecosystem-Model/dev
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Merge branch 'tests/i66-unit-test-fixes' of https://github.com/Atlantis-Ecosystem-Model/atlantistools into tests/i66-unit-test-fixes
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tests(unit test- random): moved code inside the test_that function to prevent warnings
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tests(unit test- sc-init): commented all code since there was no existing test_that test
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tests(unit test- sc-overlap): moved code inside the test_that function to prevent warnings
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Commits on May 20, 2026
refactor(unit tests): package:: reeference to functins that create sample data for tests and examples
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tests(unit tests): move contnent inside of tet that function to prevent warnings
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tests(unit tests): tests not passing many years ago. not sure why. needs a rewrite. out of scope her. Commented out faling tests
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tests(unit tests load-dietcheck): removed test with unused flag
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docs(load_nc_physics): failed test was missing variable declaration
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fix(load-txt): old evaluation of string column names updated to use tidy evaluation
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Merge pull request #71 from Atlantis-Ecosystem-Model/tests/i66-unit-test-fixes
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feature(version_flag removal): meaningless flag removed from package: function arguments, code, tests, examples
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Merge pull request #72 from Atlantis-Ecosystem-Model/feature/i64-version-flag-removal
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Commits on May 21, 2026
feature!(native pipe): moved old pipe to data-raw (magritrr)
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refactor(native pipe): change from magrittr to native with some minor code adjustments to remove dependencies on dot argument.
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chore(native pipe): remove magrittr from namespace, and DESCRIPTION
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Merge pull request #74 from Atlantis-Ecosystem-Model/feature/i51-use-native-r-pipe
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chore(release): files ready for next release
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