v1.8.3

Fixed check for introns when deletion and insertion are next to each other at the end of the read.

v1.8.2

Release v1.8.2

Release 1.8.1

Minor updates.

Release 1.8

v1.8

Release v1.8

Release 1.7.0

Updated changelog.txt

Release 1.6

Major code refactoring, several optimizations, and bugfixes

Release 1.5.8

Fixing null pointer exception on edge case.
Othe improvements and bugfixes.

Release 1.5.7

• Fixed: Somdict output and NM negative value changes
• Mismatches, vext changes from the last commit in Perl repo
• Fix for NPE in NM join to output
• Fixed: Skipping indels after introns
• Improved: Very high quality values in BAM files (collapsed consensus reads)

Release 1.5.6

• SV variants being reported when '--nosv' was set
• Fixed negative values on coverage, breaking Fisher tests downstream
• Added filter for variants within BED intervals (only show variants if their 5'end lands on the interval of interest).

Release 1.5.5

Main feature: SVs