other_annotations

collected annotations of small clade ASG species

currently:

• Euglenozoa (Rhynchopus euleeides, Rhynchopus sp. YZ270_cl-10, Flectonema sp. DT1601, Diplonema japonicum, Perkinsela sp. pyNocScin1, Eutreptiella sp. 'Long Island Sound 2002', Rhynchopus humris)
• Chlorophyta (Protoeuglena noctilucae)
• Xenacoelomorpha (Symsagittifera roscoffensis, Convolutriloba macropyga)
• Bivalvia (Americardia media)

currently created using TE Tools => VARUS => BRAKER3 / GALBA => OMArk => MakeHub

folder structure

results/

tolID/

• protein fasta file (braker.aa or galba.aa)
• GTF file (braker.gtf or galba.tpf)
• description of additional files of interest (RNASeq libraries / genome sequences / repeat libraries)

protein_sets/

• description of the origin of the sequences used to train BRAKER3/GALBA

methods/

• process used to create the annotations