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  1. lactobacilli lactobacilli Public

    Comparative pangenomics of Lactobacillus helveticus, testing whether dairy niche shapes accessory gene content beyond phylogeny

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  2. targeted-metabolomics-pipeline targeted-metabolomics-pipeline Public

    Statistical analysis of THz radiation impact on cell metabolomics

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  3. bioml-labs bioml-labs Public

    Six applied machine-learning projects on biomedical data - population genetics, transcriptomics, multi-omics integration, clinical prediction and medical imaging

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  4. h3n2-substitution-radicality h3n2-substitution-radicality Public

    Phylogenetic and mixed-model analysis of amino-acid substitution radicality in influenza A/H3N2 hemagglutinin

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  5. ngs-pipelines ngs-pipelines Public

    End-to-end NGS analyses - bulk and single-cell RNA-seq, 16s microbiome, exome variant calling - with QC treated as evidence and limitation written down

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  6. protein-structure-modelling protein-structure-modelling Public

    Three studies in protein structure modeling: backbone geometry measured from PDB structures and used to rebuild Cβ atoms, backbone-dependent x1, rotamers of tyrosine, and a CNN for Cα contact maps

    Jupyter Notebook