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1. AllTheBacteria AllTheBacteria Public

   Follow up to Grace Blackwell's 661k dataset, for 2023

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2. atb-cli atb-cli Public

   All The Bacteria CLI — query 3.2M bacterial genomes (AMR, MLST, assemblies, metadata) from the terminal

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3. Phylign Phylign Public

   Forked from karel-brinda/Phylign

   Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on a laptop within a few hours.

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4. ATB_website ATB_website Public

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5. atb-paper atb-paper Public

   Scripts for reproducing the AllTheBacteria paper

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