Skip to content

Navigation Menu

Appearance settings

AU-ENVS-Bioinformatics

View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

Uh oh!

There was an error while loading. Please reload this page.

Uh oh!

There was an error while loading. Please reload this page.

Bioinformatics group of AU-ENVS

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

README.md

AU-ENVS-Bioinformatics 🦠

Pinned Loading

TotalRNA-Snakemake TotalRNA-Snakemake Public

A pipeline for TotalRNA analysis

Jupyter Notebook 4 3
IlluminaSnakemake IlluminaSnakemake Public

A pipeline for processing raw Illumina reads to draft assemblies and annotations.

Python 1

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All C Dockerfile Jupyter Notebook Python R

Sort

Select order

Last updated Name Stars

Showing 10 of 14 repositories

TotalRNA-Snakemake Public
A pipeline for TotalRNA analysis

AU-ENVS-Bioinformatics/TotalRNA-Snakemake's past year of commit activity

Jupyter Notebook 4 MIT 3 3 0 Updated Jun 29, 2026
TotalRNA-Snakemake-databases Public
Download reference databases and generate indexing used in the TotalRNA-Snakemake pipeline.

AU-ENVS-Bioinformatics/TotalRNA-Snakemake-databases's past year of commit activity

Python 0 0 0 0 Updated Feb 17, 2026
phyloENVS Public
Tailored Tools for Phyloseq-based Community Analysis.

AU-ENVS-Bioinformatics/phyloENVS's past year of commit activity

R 1 0 0 0 Updated Oct 3, 2025
huginn-emu-smk Public

AU-ENVS-Bioinformatics/huginn-emu-smk's past year of commit activity

Python 0 MIT 0 0 0 Updated Apr 25, 2024
emu-smk Public
Snakemake pipeline for running EMU

AU-ENVS-Bioinformatics/emu-smk's past year of commit activity

Python 2 MIT 0 0 0 Updated Apr 23, 2024
microbial-networks Public

AU-ENVS-Bioinformatics/microbial-networks's past year of commit activity

Dockerfile 0 MIT 0 0 0 Updated Mar 27, 2024
jupyter_annotation Public
Annotation of contigs from TotalRNA

AU-ENVS-Bioinformatics/jupyter_annotation's past year of commit activity

Jupyter Notebook 0 MIT 0 0 0 Updated Feb 28, 2024
huginn-TotalRNA-Snakemake Public
TotalRNA pipeline for huginn

AU-ENVS-Bioinformatics/huginn-TotalRNA-Snakemake's past year of commit activity

Python 0 0 0 0 Updated Feb 7, 2024
cmg-biotools Public

AU-ENVS-Bioinformatics/cmg-biotools's past year of commit activity

C 1 0 0 0 Updated Oct 11, 2023
GR21_genome_mining Public Forked from atejaarsma/GR21_genome_mining
R scripts related to genome mining of Greenland Ice Sheet genomes study

AU-ENVS-Bioinformatics/GR21_genome_mining's past year of commit activity

R 0 MIT 1 0 0 Updated Aug 28, 2023

View all repositories

People

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.