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tools: update Potree wrapper to 1.2.0 - #8

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kgerb wants to merge 6 commits into
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update_3dtrees_potree_v1_2_0
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tools: update Potree wrapper to 1.2.0#8
kgerb wants to merge 6 commits into
masterfrom
update_3dtrees_potree_v1_2_0

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@kgerb

@kgerb kgerb commented Jul 2, 2026

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Summary

  • bump the 3Dtrees Potree Galaxy wrapper to ghcr.io/3dtrees-earth/3dtrees_potree:1.2.0
  • expose the new comma-separated special coloring instance attributes argument with the default PredInstance_SAT,PredInstance_FoMa
  • add a multi-segmentation LAZ fixture with two instance segmentations and two species attributes
  • update tests to assert both generated coloring attributes and both special coloring mapping JSON files

Validation

  • docker pull ghcr.io/3dtrees-earth/3dtrees_potree:1.2.0
  • planemo test --docker --docker_run_extra_arguments "--cpus 10 --memory 50g" --job_workers 1 --test_timeout 1800 tools/3dtrees_potree/3dtrees_potree.xml
  • Result: All 2 test(s) executed passed.

bgruening and others added 5 commits June 29, 2026 15:33
* update CI

* Update ci.yaml

* Update pr.yaml

* Update slash.yaml
* Add ForestMamba Galaxy wrapper

* test: run ForestMamba wrapper on mikro fixture

* fix: use ForestMamba GHCR image

* fix: use v6 ForestMamba config

* fix: use v6 config with existing ForestMamba image

* feat: add ForestMamba Galaxy wrapper naming

* docs: update ForestMamba shed description

* fix: address ForestMamba wrapper review

* fix: use ForestMamba input element identifier directly

* fix: inline ForestMamba input filename

* test: assert ForestMamba no-GPU failure

* fix: address ForestMamba wrapper review comments

* fix: simplify ForestMamba wrapper help

* fix: trim ForestMamba help text

* fix: escape ForestMamba numba cache env var

* fix: collect ForestMamba outputs from work dir

* fix: validate ForestMamba dimension names

* fix: use markdown headings in ForestMamba help
* Add KAT hist, comp, gcp

* Update .shed.yml

* remove kat_hist

* Fix overwritten tools

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Co-authored-by: Björn Grüning <bjoern@gruenings.eu>
@kgerb
kgerb force-pushed the update_3dtrees_potree_v1_2_0 branch from 220ff2b to a8a0a84 Compare July 2, 2026 14:53
@kgerb
kgerb force-pushed the update_3dtrees_potree_v1_2_0 branch from a8a0a84 to 22711c9 Compare July 2, 2026 15:36
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3 participants