"I installed TADbit but couldn't export the model function. I can run the test set normally."
optional arguments:
-h, --help show this help message and exit
AVAILABLE PROGRAMS:
{map,parse,filter,describe,clean,normalize,bin,export,import,merge,segment}
map Map Hi-C reads and organize results in an output
working directory
parse Parse mapped Hi-C reads and get the intersection
filter Filter parsed Hi-C reads and get valid pair of reads
to work with
describe Describe jobs and results in a given working directory
clean Delete jobs and results of a given list of jobids in a
given directories
normalize normalize Hi-C data and generates array of biases
bin bin Hi-C data into matrices
export export Hi-C data to other formats
import import Hi-C data to TADbit toy BAM
merge load two working directories with different Hi-C data
samples and merges them into a new working directory
generating some statistics
segment Finds TAD or compartment segmentation in Hi-C data.
"I installed TADbit but couldn't export the model function. I can run the test set normally."
optional arguments:
-h, --help show this help message and exit
AVAILABLE PROGRAMS:
{map,parse,filter,describe,clean,normalize,bin,export,import,merge,segment}
map Map Hi-C reads and organize results in an output
working directory
parse Parse mapped Hi-C reads and get the intersection
filter Filter parsed Hi-C reads and get valid pair of reads
to work with
describe Describe jobs and results in a given working directory
clean Delete jobs and results of a given list of jobids in a
given directories
normalize normalize Hi-C data and generates array of biases
bin bin Hi-C data into matrices
export export Hi-C data to other formats
import import Hi-C data to TADbit toy BAM
merge load two working directories with different Hi-C data
samples and merges them into a new working directory
generating some statistics
segment Finds TAD or compartment segmentation in Hi-C data.