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Codelines of Linux to study Bioinformatic: Comparation the genomic of variety of species and check the quality of the data downloaded

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Showing step-by-step the construct of analysis in Bioinformatic

Data

  • Genome
    • Actinopterygii
    • Sarcopterygii
    • Chondrichthyes

Annotation

  • BRAKER2

Alignment

  • BLAST

Assembling

  • Trinity

Clean adn Filtring

  • Seqyclean
  • Trimommatic
  • trimAl

Orthologs

  • OrthoFinder
  • OrthoMCL

Phylogenetic

  • IQ-tree

UCE

  • Phyluce

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Codelines of Linux to study Bioinformatic: Comparation the genomic of variety of species and check the quality of the data downloaded

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