Given a chimeric contig, when a bridge read is aligned to the contig, the contig is in one piece; but when the contig is aligned to the genome, it becomes two pieces.
Problem: When looping through the contig to the first-piece, how to infer the genome coord of a clv that's actually aligned the second piece?
Given a chimeric contig, when a bridge read is aligned to the contig, the contig is in one piece; but when the contig is aligned to the genome, it becomes two pieces.
Problem: When looping through the contig to the first-piece, how to infer the genome coord of a clv that's actually aligned the second piece?