RcppML/NAMESPACE at main · zdebruine/RcppML · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
# Generated by roxygen2: do not edit by hand

S3method("$",factor_net_result)
S3method(as.data.frame,nmf_assessment)
S3method(as.data.frame,training_logger)
S3method(dim,gpu_sparse_matrix)
S3method(fit,factor_net)
S3method(ncol,gpu_sparse_matrix)
S3method(nrow,gpu_sparse_matrix)
S3method(plot,consensus_nmf)
S3method(plot,dclust)
S3method(plot,nmf)
S3method(plot,nmfCrossValidate)
S3method(plot,nmfSummary)
S3method(plot,training_logger)
S3method(predict,factor_net_result)
S3method(print,factor_net)
S3method(print,factor_net_cv)
S3method(print,factor_net_result)
S3method(print,fn_classifier_eval)
S3method(print,fn_factor_config)
S3method(print,fn_global_config)
S3method(print,fn_node)
S3method(print,gpu_sparse_matrix)
S3method(print,nmf_assessment)
S3method(print,training_logger)
S3method(summary,consensus_nmf)
S3method(summary,factor_net_result)
S3method(summary,fn_classifier_eval)
export(H)
export(W)
export(align)
export(assess)
export(auto_nmf_distribution)
export(bipartiteMatch)
export(bipartition)
export(classify_embedding)
export(classify_logistic)
export(classify_rf)
export(compare_nmf)
export(compute_target)
export(consensus_nmf)
export(cosine)
export(cross_validate_graph)
export(dclust)
export(diagnose_dispersion)
export(diagnose_zero_inflation)
export(evaluate)
export(export_log)
export(factor_add)
export(factor_concat)
export(factor_condition)
export(factor_config)
export(factor_input)
export(factor_net)
export(factor_shared)
export(fit)
export(gpu_available)
export(gpu_info)
export(nmf)
export(nmf_layer)
export(nnls)
export(pca)
export(reconstruct)
export(refine)
export(score_test_distribution)
export(simulateNMF)
export(simulateSwimmer)
export(sparsity)
export(st_add_transpose)
export(st_chunk_ranges)
export(st_filter_cols)
export(st_filter_rows)
export(st_free_gpu)
export(st_info)
export(st_map_chunks)
export(st_obs_indices)
export(st_read)
export(st_read_dense)
export(st_read_gpu)
export(st_read_obs)
export(st_read_var)
export(st_slice)
export(st_slice_cols)
export(st_slice_rows)
export(st_write)
export(st_write_dense)
export(st_write_list)
export(svd)
export(svd_layer)
export(training_logger)
export(variance_explained)
exportClasses(nmf)
exportClasses(svd)
exportMethods("$")
exportMethods("[")
exportMethods("[[")
exportMethods(biplot)
exportMethods(coerce)
exportMethods(dim)
exportMethods(dimnames)
exportMethods(head)
exportMethods(predict)
exportMethods(prod)
exportMethods(reconstruct)
exportMethods(show)
exportMethods(sort)
exportMethods(subset)
exportMethods(summary)
exportMethods(t)
exportMethods(variance_explained)
import(Matrix)
importFrom(Rcpp,evalCpp)
importFrom(grDevices,hcl.colors)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,plot.window)
importFrom(graphics,rect)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(methods,as)
importFrom(methods,canCoerce)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(methods,validObject)
importFrom(stats,as.dist)
importFrom(stats,cophenetic)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,predict)
importFrom(stats,rbinom)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(utils,setTxtProgressBar)
importFrom(utils,str)
importFrom(utils,txtProgressBar)
useDynLib(RcppML, .registration = TRUE)