Not enough documentation for binless segmentation

[Tanveer14]

Hi,
I am Naeem Ahmed from Dr. Mukul Bansal's lab at the University of Connecticut. I am interested in using the SCNV tool for comparison purposes in my paper. However, I am facing several issues.

1. I could not find enough documentation for the binless segmentation. The instructions are not clear on what part does what.
2. How do we use the initial bin-based results in the binless part?
3. The codes require files in certain formats, like .rda and .seq, but no prior steps produced files with these formats. How do we get to these formats?
4. The codes require an R file called "ScanCBS3.R". Where can we get this file?

It would be of great help if you could answer my queries. Thank you.

Best,
Naeem Ahmed,
Ph.D. student,
School of Computing,
UCONN.