ToDo

ToDo
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Shiny app / Package
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Little fixes
- add some padding to around the alignment
- add color scheme to aln_plot
- add hoverover to divPlot
- add alignment diversity plot
- add example/template tair_locus and name file
- "Diversity plot" handling for premature stops (and frame shifts)?
- update comments and documentation in code (mainly VCF_Utils.R)
- Add tair symbols throughout
- check mapping tab for odd variants being displayed
- coding diversity for indels (edit getCodingDiv, use Functional_Class)
- add include secondary transcripts checkbox
- better description of unique tables vs total


New Functionalities

- add import annotation button
- add import annotation handling
- Search by tair_symbol (potentially very buggy because not all symbols are common names)
- show diversity on a histogram of genome wide stats